AutoQTL is an automated machine learning tool for QTL analysis. The goal of AutoQTL is to automate QTL analysis by building an analytics pipeline optimized for explaining variation in a quantitative trait given a set of genetic variants. It uses genetic programming (GP) as the search and optimization method.
#geneticsmeetsautoML
Anyone interested in AutoQTL can clone the repository and run the autoqtl_test.py file in the 'test' folder in a python environment.
We continue to work on to add new features and functionality to AutoQTL and make it available as a python package. Suggestions are welcome.