patbohn
Interested in Nanopore Seq. looking forward to making it more accessible and applying it to solve important problems.
Plasmidsaurus
Pinned Repositories
aoc-2023
aoc24
Advent of Code 2024
bam2fq
bampile
Count per read match/mismatches at specified positions
boring
Minimal theme for Zola
tombo_bam_input
Allows feeding in own alignments (not overly optimized)
Nano-DMS-MaP
Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices
Nano-DMS-MaP-functions
Python functions to use in Nano-DMS-MaP analysis
patbohn's Repositories
patbohn/tombo_bam_input
Allows feeding in own alignments (not overly optimized)
patbohn/aoc-2023
patbohn/aoc24
Advent of Code 2024
patbohn/bam2fq
patbohn/bampile
Count per read match/mismatches at specified positions
patbohn/boring
Minimal theme for Zola
patbohn/f5c_filter_signal
forked from hasindu2008 to add (optional) signal filtering
patbohn/ffast
Fast summary of fastq files (length, mean quality and qscore distribution)
patbohn/perbase_ubuntu18.04
Per-base per-nucleotide depth analysis, lowering cmake version requirement for Ubuntu 18.04 compatibility
patbohn/PORE-cupine
First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
patbohn/read_until_api
Read Until client library for Nanopore Sequencing