patbohn

Interested in Nanopore Seq. looking forward to making it more accessible and applying it to solve important problems.

HIRI

Pinned Repositories

aoc-2023
Language:Rust00
bam2fq
Language:Rust00
bampile
Count per read match/mismatches at specified positions
Language:Rust00
boring
Minimal theme for Zola
Language:SCSS00
f5c_filter_signal
forked from hasindu2008 to add (optional) signal filtering
Language:C00
tombo_bam_input
Allows feeding in own alignments (not overly optimized)
Language:Python1 0 00
Nano-DMS-MaP
Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices
Language:Jupyter Notebook5 0 10
Nano-DMS-MaP-functions
Python functions to use in Nano-DMS-MaP analysis
Language:Python0 1 00

patbohn's Repositories

patbohn/tombo_bam_input
Allows feeding in own alignments (not overly optimized)
Language:Python1 0 00
patbohn/aoc-2023
Language:Rust00
patbohn/bam2fq
Language:Rust00
patbohn/bampile
Count per read match/mismatches at specified positions
Language:Rust00
patbohn/boring
Minimal theme for Zola
Language:SCSS00
patbohn/f5c_filter_signal
forked from hasindu2008 to add (optional) signal filtering
Language:C00
patbohn/ffast
Fast summary of fastq files (length, mean quality and qscore distribution)
Language:Rust0 1 00
patbohn/perbase_ubuntu18.04
Per-base per-nucleotide depth analysis, lowering cmake version requirement for Ubuntu 18.04 compatibility
Language:Rust
patbohn/PORE-cupine
First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
Language:R
patbohn/read_until_api
Read Until client library for Nanopore Sequencing