patbohn
Interested in Nanopore Seq. looking forward to making it more accessible and applying it to solve important problems.
HIRI
patbohn's Stars
KleistLab/WarpDemuX
direct RNA nanopore sequencing barcode design and demultiplexing
KleistLab/ADAPTed
Identification of adapter sequences in nanopore sequencing
RatanShreshtha/DeepThought
A simple blog theme focused on writing powered by Bulma and Zola.
skovaka/uncalled4
Traijan1/2023-advent-of-code
sstadick/aoc-2023
novoalab/m6ABasecaller
An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedor, Pryszcz et al., BioRxiv 2023)
wdecoster/nanopack
An overview of all nanopack tools
hiruna72/squigualiser
Visualise and analyse nanopore (ONT) raw signals
adnaniazi/tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
eternagame/EternaFold
Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
wdecoster/NanoPlot
Plotting scripts for long read sequencing data
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
rawpython/remi
Python REMote Interface library. Platform independent. In about 100 Kbytes, perfect for your diet.
parklab/bamsnap
ChaissonLab/LRA
Long read aligner
DepledgeLab/DRUMMER
DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
chriskiehl/Gooey
Turn (almost) any Python command line program into a full GUI application with one line
novoalab/EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
uedaLabR/nanoDoc
RNA modification detection using Nanopore raw reads with Deep One Class classification
uwmisl/Porcupine
Porcupine is a molecular tagging system to tag physical objects with DNA.
LJI-Bioinformatics/Excel-Reverse-Complement
A simple add-in for Excel supplying functions to calculate the reverse, complement, and reverse-complement of a nucleotide sequence
Psy-Fer/deeplexicon
Signal based nanopore RNA demultiplexing with convolutional neural networks
nanoporetech/bonito
A PyTorch Basecaller for Oxford Nanopore Reads