patbohn

patbohn's Stars

• chriskiehl/Gooey

  Turn (almost) any Python command line program into a full GUI application with one line

  Language:Python21k2816071k

• rawpython/remi

  Python REMote Interface library. Platform independent. In about 100 Kbytes, perfect for your diet.

  Language:Python3.6k122409408

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python4631135948

• nanoporetech/bonito

  A PyTorch Basecaller for Oxford Nanopore Reads

  Language:Python40331349123

• philres/ngmlr

  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

  Language:C++2972210040

• wdecoster/nanopack

  An overview of all nanopack tools

  Language:Python23681216

• RatanShreshtha/DeepThought

  A simple blog theme focused on writing powered by Bulma and Zola.

  Language:Sass181113693

• ablab/IsoQuant

  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

  Language:Python1601223415

• parklab/bamsnap

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• ChaissonLab/LRA

  Long read aligner

  Language:C++1159378

• novoalab/EpiNano

  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

  Language:Python114514231

• hiruna72/squigualiser

  Visualise and analyse nanopore (ONT) raw signals

  Language:Python1124253

• eternagame/EternaFold

  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.

  Language:C++5714410

• adnaniazi/tailfindr

  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

  Language:R5437316

• skovaka/uncalled4

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• LJI-Bioinformatics/Excel-Reverse-Complement

  A simple add-in for Excel supplying functions to calculate the reverse, complement, and reverse-complement of a nucleotide sequence

  Language:VBA445915

• Psy-Fer/deeplexicon

  Signal based nanopore RNA demultiplexing with convolutional neural networks

  Language:Jupyter Notebook379259

• DepledgeLab/DRUMMER

  DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets

  Language:Python212312

• uedaLabR/nanoDoc

  RNA modification detection using Nanopore raw reads with Deep One Class classification

  Language:Jupyter Notebook192152

• novoalab/m6ABasecaller

  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedor, Pryszcz et al., BioRxiv 2023)

  Language:Jupyter Notebook152101

• KleistLab/WarpDemuX

  direct RNA nanopore sequencing barcode design and demultiplexing

  Language:Jupyter Notebook10603

• uwmisl/Porcupine

  Porcupine is a molecular tagging system to tag physical objects with DNA.

  Language:Jupyter Notebook7722

• KleistLab/ADAPTed

  Identification of adapter sequences in nanopore sequencing

  Language:Python50

• sstadick/aoc-2023

  Language:Rust1203

• Traijan1/2023-advent-of-code

  Language:Makefile1100