nanovis/DiffFit

Issues

• Metrics precision

  #26 opened 5 months ago by RodenLuo
  1

• Window initialization bug

  #32 opened 5 months ago by RodenLuo
  2

• ChimeraX camera right vector needed

  #31 opened 5 months ago by RodenLuo
  2

• Cluster viewer bug and enhancement

  #29 opened 6 months ago by RodenLuo
  0

• Check the details of ChimeraX's fitting results clustering algorithm and align DiffFit's with it or just use it

  #22 opened 6 months ago by RodenLuo
  5

• DiffFit command interface is needed for CI/CD and automatic benchmarking

  #27 opened 6 months ago by RodenLuo
  0

• Zeroing out the already fitted density | Find the API for `subtracting the density`

  #4 opened 6 months ago by RodenLuo
  12

• Get ChimeraX data structurea and Gaussian smoothing to DiffFit

  #14 opened 6 months ago by RodenLuo
  4

• Consider using "envelope sampling" or "cover sampling" in paper writing instead of "adaptive sampling"

  #12 opened 7 months ago by RodenLuo
  2

• Click a row in the fitting result table for the second time will show a different tranformation

  #24 opened 8 months ago by RodenLuo
  0

• DiffFit fitting result is not exactly the same as ChimeraX's Fit in Map

  #23 opened 8 months ago by RodenLuo
  0

• The first run is slightly longer than the subsequent runs

  #21 opened 8 months ago by RodenLuo
  0

• Qt QHBoxLayout for "Single" tab

  #19 opened 8 months ago by RodenLuo
  1

• Volume matrix accessing and modifying

  #16 opened 9 months ago by RodenLuo
  11

• Package DiffFit as a standard Python wheel

  #11 opened 8 months ago by RodenLuo
  4

• Asterisk unpacking in numpy array indexing requires ChimeraX 1.7 which uses Python 3.11

  #20 opened 8 months ago by RodenLuo
  0

• `v.writable_copy().matrix().sum()` is different from `v.matrix().sum()`

  #18 opened 9 months ago by RodenLuo
  2

• Random placement initializations

  #17 opened 9 months ago by RodenLuo
  5

• New translation initialization

  #13 opened 9 months ago by RodenLuo
  1

• Threshold the fit results on the atom's map occupance before clustering

  #15 opened 9 months ago by RodenLuo
  0

• Record tutorial videos for install, compute, view

  #10 opened 9 months ago by RodenLuo
  1

• Install DiffFit to ChimeraX

  #1 opened 9 months ago by RodenLuo
  3

• Write the doc

  #9 opened 9 months ago by RodenLuo
  0

• Change the tool nav to "Tools > Volume Data" instead of "Tools > General"

  #8 opened 9 months ago by RodenLuo
  0

• Use the iter with the largest correlation when clustering

  #6 opened 9 months ago by RodenLuo
  1

• Speedup `cluster_and_sort_sqd`

  #5 opened 9 months ago by RodenLuo
  1

• Buttons for DiffFit Viewer

  #3 opened 9 months ago by RodenLuo
  5

• Expose `shift_tolerance` and `angle_tolerance`

  #7 opened 9 months ago by RodenLuo
  1