Pinned Repositories
2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
AdmixtureMapping
bio_tools
Useful bioinformatic scripts
bioinformatics
Course materials for Computational Biology and Bioinformatics - BI462
metagenomics
metagenomics analysis
omics_tools
Code writen to be used in RAD-tag population data analysis
RNAseq
script
WES
WGCNA
WGCNA pipeline
nanshanjin's Repositories
nanshanjin/WES
nanshanjin/WGCNA
WGCNA pipeline
nanshanjin/script
nanshanjin/2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
nanshanjin/AdmixtureMapping
nanshanjin/bio_tools
Useful bioinformatic scripts
nanshanjin/bioinformatics
Course materials for Computational Biology and Bioinformatics - BI462
nanshanjin/metagenomics
metagenomics analysis
nanshanjin/RNAseq
nanshanjin/Bioinformatics_Scripts
A collection of scripts commonly used while running bioinformatics analyses on the Tulane University Cypress HPC
nanshanjin/CloverAnalysisPipeline
nanshanjin/CPG
Building a Chinese pan-genome of 486 individuals
nanshanjin/fastv
An ultra-fast tool to detect and visualize microbial sequences from sequencing data, and can be used to detect viral infectious diseases, like COVID-19.
nanshanjin/galaxy-wrappers
Galaxy tools from South Green
nanshanjin/GenomeAnalysis
Repository for project for Genome Analysis course at UU
nanshanjin/GWAS_Pipelines
Instructions and helpful R code for Running GEMMA and GAPIT
nanshanjin/InterpretableMLBook
《可解释的机器学习--黑盒模型可解释性理解指南》，该书为《Interpretable Machine Learning》中文版
nanshanjin/MAKER-genome-annotations-tutorial
Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
nanshanjin/MVP
A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
nanshanjin/nanshanjin.github.io
nanshanjin/NGS_data_processing
Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
nanshanjin/popgen
Population genetics analyses
nanshanjin/Population_Genomics_Scripts
Scripts of population genomics analysis
nanshanjin/POPULATIONS_GENOMICS
populations_genomics
nanshanjin/Python
All Algorithms implemented in Python
nanshanjin/RAD_Tools
A collection of usefull tools for RAD or GBS data analysis
nanshanjin/real_metagenome_pipeline
nanshanjin/single-cell-rna-seq
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
nanshanjin/solarized
precision color scheme for multiple applications (terminal, vim, etc.) with both dark/light modes
nanshanjin/vim-colors-solarized
precision colorscheme for the vim text editor