nanshe-org

Pinned Repositories

nanshe
An image processing toolkit
Language:Python6 3 2666
nanshe-benchmarking
Designed to begin benchmarking on nanshe. Will eventually be folded into nanshe.
0 2 02
nanshe_workflow
Provides a Jupyter workflow for running nanshe.
Language:Python3 2 184
nanshe_workflow_deploy_janelia
Helps install and run the workflow on the Janelia Cluster.
Language:Shell1 2 43
rank_filter
A simple python module containing an in-place linear rank filter optimized in C++.
Language:Python3 3 308
runipy
Run IPython notebooks as command-line scripts, generate HTML reports
Language:Python0 2 00
sirara
A Pythonic factorization module
Language:Python0 2 01
spams-devel
A fork of spams ( http://spams-devel.gforge.inria.fr/ ) for GitHub
Language:C++0 2 00
spams-python
My fork of SPAMS ( http://spams-devel.gforge.inria.fr ) for python
Language:C++0 2 04
splauncher
Provides simple strategies for launching jobs.
Language:Python00

nanshe-org's Repositories

nanshe-org/nanshe
An image processing toolkit
Language:Python6 3 2666
nanshe-org/nanshe_workflow
Provides a Jupyter workflow for running nanshe.
Language:Python3 2 184
nanshe-org/rank_filter
A simple python module containing an in-place linear rank filter optimized in C++.
Language:Python3 3 308
nanshe-org/nanshe_workflow_deploy_janelia
Helps install and run the workflow on the Janelia Cluster.
Language:Shell1 2 43
nanshe-org/docker_nanshe_workflow
A docker container holding the nanshe workflow and the dependencies needed to run it.
Language:Python0 2 43
nanshe-org/docker_nanshe_workflow_mirror
A simple Dockerfile to mirror the nanshe_workflow container to other Docker registries.
0 2 02
nanshe-org/nanshe-benchmarking
Designed to begin benchmarking on nanshe. Will eventually be folded into nanshe.
0 2 02
nanshe-org/nanshe-build
DEPRECATED: conda-forge now holds all of nanshe's dependencies.
Language:Shell0 2 123
nanshe-org/nanshe-cookiecutter
A cookiecutter template for splitting up nanshe.
Language:Python0 2 41
nanshe-org/runipy
Run IPython notebooks as command-line scripts, generate HTML reports
Language:Python0 2 00
nanshe-org/sirara
A Pythonic factorization module
Language:Python0 2 01
nanshe-org/spams-devel
A fork of spams ( http://spams-devel.gforge.inria.fr/ ) for GitHub
Language:C++0 2 00
nanshe-org/spams-python
My fork of SPAMS ( http://spams-devel.gforge.inria.fr ) for python
Language:C++0 2 04
nanshe-org/splauncher
Provides simple strategies for launching jobs.
Language:Python00
nanshe-org/docker_centos_conda
For building a docker image on CentOS with miniconda installed.
Language:Shell2 0
nanshe-org/docker_centos_drmaa_conda
For building a docker image on CentOS with Grid Engine, DRMAA, and miniconda installed.
Language:Shell2 0
nanshe-org/docker_centos_mirror
A mirror for the CentOS Docker image
Language:Dockerfile2 0
nanshe-org/docker_nanshe
A repo to build a docker image with the latest working release of nanshe and its dependencies.
Language:Dockerfile2 03
nanshe-org/docker_nanshe_mirror
Simply pulls in this image ( https://github.com/nanshe-org/docker_nanshe ).
2 0
nanshe-org/docker_nanshe_notebook
A docker container with nanshe and the Jupyter Notebook installed
Language:Dockerfile2 02
nanshe-org/ilastik-centos_6_3-test-vm
Created to give a barebones VM that is similar to the Janelia cluster for building and testing purposes.
Language:Ruby2 0
nanshe-org/ilastik-scientific_linux_6_3-test-vm
Created to give a barebones VM that is similar to the Janelia cluster for building and testing purposes.
Language:Ruby2 0
nanshe-org/nanshe_workflow_deploy_aws
Helps install and run the workflow on AWS.
2 02