Metagenomics Classification

Reproducible analysis of metagenomics pipeline results starting with the nf-core/mag results on the Rothman HTP dataset

See the output branch for the notebook with rendered output.

Install dependencies

# Download the repository
git clone https://github.com/naobservatory/metagenomics_classification.git && cd metagenomics_classification

# Install dependencies with Conda
conda env create --file environment.yml && conda activate metagenomics_classification