Pinned Repositories
docker_xcms
Docker container based on Rocker RStudio verse for CyVerse VICE
fusarium_wilt_lettuce_di
MetaboDirect pipeline/notebooks for Fusarium wilt of Lettuce project.
gnps_sirius_test
make_hpc_jobs
Collection of python scripts to generate jobs in the HPC. I used argparse and Gooey, and tested using pytest.
my_carpentries_workshops
Collection of my resources/materials (code, notes, etc.) for The Carpentries workshops I taught
oak_metabolomics
Collection of scripts for the oak metabolic profiling paper.
tdi_capstone
My AgricultureVision Capstone Project
wrapper_for_corems
Wrapper for CoreMS
nathaliagg's Repositories
nathaliagg/docker_xcms
Docker container based on Rocker RStudio verse for CyVerse VICE
nathaliagg/gnps_sirius_test
nathaliagg/make_hpc_jobs
Collection of python scripts to generate jobs in the HPC. I used argparse and Gooey, and tested using pytest.
nathaliagg/oak_metabolomics
Collection of scripts for the oak metabolic profiling paper.
nathaliagg/fusarium_wilt_lettuce_di
MetaboDirect pipeline/notebooks for Fusarium wilt of Lettuce project.
nathaliagg/my_carpentries_workshops
Collection of my resources/materials (code, notes, etc.) for The Carpentries workshops I taught
nathaliagg/tdi_capstone
My AgricultureVision Capstone Project
nathaliagg/wrapper_for_corems
Wrapper for CoreMS
nathaliagg/2020-02-15-Tucson
nathaliagg/2020_February_Bash_Python
nathaliagg/awesome-agriculture
Open source technology for agriculture, farming, and gardening
nathaliagg/cloudplot
R Shiny App to make cloud plots for LCMS/MS data
nathaliagg/CoreMS
CoreMS is a comprehensive mass spectrometry framework for software development and data analysis of small molecules
nathaliagg/foss-2019
FOSS website
nathaliagg/FunGAP
FunGAP: fungal Genome Annotation Pipeline
nathaliagg/lambda
Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling
nathaliagg/marinacria
I made this website for my sister using Hugo themes. My sister makes handmade personalized art pieces in watercolor and lettering.
nathaliagg/ml-pen-and-paper-exercises
Pen and paper exercises in machine learning
nathaliagg/my_rosalind_answers
My answers for Rosalind challenges
nathaliagg/nathaliagg
My personal profile (:
nathaliagg/nggpage
nathaliagg/ophio_circos
Circos plot with ribbon links, mtDNA Ophiosphaerella-P.nodorum
nathaliagg/pmi
Postmortem interval (PMI) is the time elapsed since individual's death. This is a meta-analysis of PMI studies published in Qiita.
nathaliagg/projects
My collection of Python and R projects. I include tutorials and full projects in this repo.
nathaliagg/scraping_usda_oak_hybridization
Scraping USDA Plants database to extract information about oak species hybridization
nathaliagg/Sherman
A simple Bisulfite FastQ Read Simulator (BiQRS)
nathaliagg/sphagnum_tandemms
A brief tutorial on LCMS-MS data analysis
nathaliagg/sulfate_experiment
nathaliagg/ten_great_papers
Ten great papers for wet lab biologists starting out in computational biology
nathaliagg/WSHPackage
R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL