nathanieljevans/cyclicIF_registration

Issues

• Edge cores being cutoff

  #29 opened 4 years ago by nathanieljevans
  0

• segmentation identifies "core" bounding boxes on image edge that aren't there

  #28 opened 4 years ago by nathanieljevans
  1

• Overlapping segmented core bounding boxes

  #27 opened 4 years ago by nathanieljevans
  0

• Occasional core registrations fail

  #26 opened 4 years ago by nathanieljevans
  0

• `restich_cores.py` failing

  #25 opened 4 years ago by nathanieljevans
  3

• Relabel core components to appear sequentially

  #24 opened 4 years ago by nathanieljevans
  0

• screen core components for artifacts prior to across-round matching

  #5 opened 4 years ago by nathanieljevans
  2

• use the Fast (E) drive or work directly of the RDS folder

  #23 opened 4 years ago by nathanieljevans
  0

• only use local config file in both pipeline (local) and libraries/scripts (repo)

  #22 opened 4 years ago by nathanieljevans
  0

• argument issues when scene name is None

  #21 opened 4 years ago by nathanieljevans
  0

• multiple core objects are assigned to the same cluster

  #20 opened 4 years ago by nathanieljevans
  0

• manual quality control prior to core re-stitching

  #16 opened 4 years ago by nathanieljevans
  3

• Need user readable option to track core labels from original image

  #17 opened 4 years ago by nathanieljevans
  2

• aggregated_results.py: `core` and `component` don't match

  #8 opened 4 years ago by nathanieljevans
  1

• tune core segmentation

  #4 opened 4 years ago by nathanieljevans
  1

• tune registration

  #6 opened 4 years ago by nathanieljevans
  1

• images need to be re-stitched after registration

  #19 opened 4 years ago by nathanieljevans
  1

• aggregated_results.csv - high missingness

  #9 opened 4 years ago by nathanieljevans
  1

• notebook results visualization needs option to assign round-channel

  #15 opened 4 years ago by nathanieljevans
  1

• R0 results not included in `aggregated_results.csv`

  #7 opened 4 years ago by nathanieljevans
  1

• provide choice on which round to use as fixed image for registration

  #14 opened 4 years ago by nathanieljevans
  0

• set up [and document] pipeline on mills workstation

  #18 opened 4 years ago by nathanieljevans
  0

• registration evaluation between all rounds

  #13 opened 4 years ago by nathanieljevans
  0

• color channel small shift

  #12 opened 4 years ago by nathanieljevans
  0

• unregisterd core .tif should be deleted after registration

  #11 opened 4 years ago by nathanieljevans
  1

• core isolation includes artifacts and multiple nearby components

  #3 opened 4 years ago by nathanieljevans
  1

• k-means-constrained failing - `There was an issue with the min cost flow input.`

  #10 opened 4 years ago by nathanieljevans
  2

• registered core naming convention - maintain current style

  #2 opened 4 years ago by nathanieljevans
  0

• local registration mask for QC

  #1 opened 4 years ago by nathanieljevans
  0