nathantspencer
Lead software engineer at syGlass, a startup building VR software solutions for immersive visualization, analysis, and communication of 3D/4D image volumes.
@IstoVisio Pittsburgh, PA
Pinned Repositories
AfterTrace
A GUI environment for rendering, correcting, and converting between SWC and HOC formats of neuron model data.
alloy
A web dashboard for aggregating and visualizing point balances, spending power, and expiration dates for airline and hotel loyalty programs. Under construction.
auto_medsheet
A web scraper script for generating medication tables from PDR.net medication reference.
DMC-ColorCodes
A simple Python scraper and the resulting CSV file, which contains color codes for each of the DMC embroidery floss colors.
helmstaedter_to_swc
A tiny MATLAB script for converting the skeletonization data provided by Helmstaedter et al., Nature 2013 from .mat format to .swc format.
memo
A minimalist, encrypted memory organizer. Provides a cross-platform CLI for recording and retrieving private notes.
ProceduralWorlds
A playground for experimenting with procedurally generated worlds. Mostly just playing with noise functions for now.
resume_cv
Variants of my resumes and CVs. Source included and commented for use as a template. Not suitable for those with LaTeX allergies.
swick
The slick way to process SWC files, which contain tree-like representations of neuron structures, in Python.
webknossos_toolkit
A set of tools for manipulation of the .nml, .swc, .zip, and .hoc files generated from webKnossos and related software. Used for processing of segmentation and skeletonization data.
nathantspencer's Repositories
nathantspencer/DMC-ColorCodes
A simple Python scraper and the resulting CSV file, which contains color codes for each of the DMC embroidery floss colors.
nathantspencer/webknossos_toolkit
A set of tools for manipulation of the .nml, .swc, .zip, and .hoc files generated from webKnossos and related software. Used for processing of segmentation and skeletonization data.
nathantspencer/ProceduralWorlds
A playground for experimenting with procedurally generated worlds. Mostly just playing with noise functions for now.
nathantspencer/alloy
A web dashboard for aggregating and visualizing point balances, spending power, and expiration dates for airline and hotel loyalty programs. Under construction.
nathantspencer/helmstaedter_to_swc
A tiny MATLAB script for converting the skeletonization data provided by Helmstaedter et al., Nature 2013 from .mat format to .swc format.
nathantspencer/memo
A minimalist, encrypted memory organizer. Provides a cross-platform CLI for recording and retrieving private notes.
nathantspencer/resume_cv
Variants of my resumes and CVs. Source included and commented for use as a template. Not suitable for those with LaTeX allergies.
nathantspencer/AfterTrace
A GUI environment for rendering, correcting, and converting between SWC and HOC formats of neuron model data.
nathantspencer/auto_medsheet
A web scraper script for generating medication tables from PDR.net medication reference.
nathantspencer/auto_vectorbase
A web scraper script for grabbing data from vectorbase.org and writing to a spreadsheet. Developed for West Virginia University.
nathantspencer/swick
The slick way to process SWC files, which contain tree-like representations of neuron structures, in Python.
nathantspencer/bashrc
A personal repository containing my standard .bashrc and .bash_profile files. Fully commented in the interests of clarity and adaptability.
nathantspencer/distract-overflow
A tiny Chrome extension to hide distracting sidebar elements from Stack Overflow and Stack Exchange network pages but retain those that are likely to be helpful.
nathantspencer/jupytext
Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts
nathantspencer/libcube2cyl
A C/C++ panoramic lib, cubic to cylindrical projection conversion, create a panorama from 6 square images.
nathantspencer/multi_minify
A lightweight Perl tool for minifying batches of files containing mixed file formats. Minifies JSON, HTML, and XML.
nathantspencer/OpenXR-MixedReality
OpenXR samples and preview headers for HoloLens and Windows Mixed Reality developers familiar with Visual Studio
nathantspencer/prt_report
Scrapes and analyzes data on the downtime of West Virginia University's Personal Rapid Transit (WVU PRT) system using the Twitter API.
nathantspencer/SimpleElastix
Multi-lingual medical image registration library
nathantspencer/sleuth
A Rust utility for inspecting, editing, and removing image metadata. Under construction!
nathantspencer/SWCParser
Reader/Writer for SWC files
nathantspencer/syglass_point_surface_colocalization
Python plugin for colocalizing counting points and surfaces.
nathantspencer/syglass_project_downsampler
A simple Python tool for creating downsampled copies of syGlass project files.
nathantspencer/syglass_surface_to_surface_colocalization
Python plugin for surface-to-surface colocalization