SpatialOmicsOverlay - Adapted to allow string and special chars in ROI names

Overview

The SpatialOmicsOverlay package contains tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP). It provides functions to extract image and XML from OME-TIFFs, overlay Regions of Interest (ROIs) onto the image, and manipulate the image (coloring, orientation, cropping). Output figures are ggplot based allowing for easy customization of images to include spatial images into data visualization.

Install the version from THIS REPOSITORY

if (!requireNamespace("devtools", quietly=TRUE))
    install.packages("devtools")
    
devtools::install_github("natmurad/SpatialOmicsOverlay", 
                         build_vignettes = F)

Citation

Griswold, M. SpatialOmicsOverlay: Spatial Overlay for Omic Data From Nanostring GeoMx data. NanoString Technologies Inc.; Seattle, WA 98109, USA. 2021.

License

This project is licensed under the MIT license.