Pinned Repositories
binomica_labs_opentron
Binomica labs Opentron protocols
G-E_Halococcus_litoralis_1935
Rough translation of 1935 research paper "Halococcus litoralis, ein obligat halphiler Farbstoffbildner"
gemsetter
Bash based tool for formatting gemlog posts with an index file. Produces date-coded, tagged posts linked to the main index file.
genome-helpers
Collection of QoL scripts to help automate microbial assembly and downstream processes
Halococcus_WIP_scripts
Halococcus preprint scripts and full size figures
jupyter_notes
Collection of jupyter notes
offline_dkms_packages
Selection of packages for offline installation of dkms (along with build-essential, make, gcc and etc) on Ubuntu LTS 22.04. Tested on HP Z280
phaster_kits
Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)
polishing_long_reads_note
Data for polishing long reads post
Telephage
From protein to phage phylogeny in single line!
naturepoker's Repositories
naturepoker/offline_dkms_packages
Selection of packages for offline installation of dkms (along with build-essential, make, gcc and etc) on Ubuntu LTS 22.04. Tested on HP Z280
naturepoker/gemsetter
Bash based tool for formatting gemlog posts with an index file. Produces date-coded, tagged posts linked to the main index file.
naturepoker/Telephage
From protein to phage phylogeny in single line!
naturepoker/G-E_Halococcus_litoralis_1935
Rough translation of 1935 research paper "Halococcus litoralis, ein obligat halphiler Farbstoffbildner"
naturepoker/genome-helpers
Collection of QoL scripts to help automate microbial assembly and downstream processes
naturepoker/Halococcus_WIP_scripts
Halococcus preprint scripts and full size figures
naturepoker/jupyter_notes
Collection of jupyter notes
naturepoker/phaster_kits
Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)
naturepoker/polishing_long_reads_note
Data for polishing long reads post
naturepoker/binomica_labs_opentron
Binomica labs Opentron protocols
naturepoker/biocube_setup
Simple setup script for downloading & compiling bio tools on new machine
naturepoker/biosample2species
Quick practice script for looking up sample/species names from a list of biosample accessions
naturepoker/commonplace_letters
Personal gemlogging script and drafts
naturepoker/dna-synth
Script suite for generating and analyzing synthetic DNA
naturepoker/hg_history
Generating QR code based on each major iteration of reference human genome, starting from hg1 - animated gif output
naturepoker/lire_debout-2012-translation
Rough draft translation of the paper "Lire debout. Le poster comme pratique de lecture dans le monde scientifique" from French to English
naturepoker/naturepoker.github.io
Static page code for the naturepoker git
naturepoker/sanger_check
Quick-and-dirty sanger sequencing fragments checker - takes two (F&R) fasta files, aligns them in clw format and outputs immediately relevant info. Meant for sanger sequenced 16s microbial barcoding results in 100s of base pair range.
naturepoker/sequence-counter
Heavily commented, quick script for processing sequence files for length and basepair composition
naturepoker/Teleagro
A spin on the Telephage suite, this one checks through Agrobacterium genbank records of about 317 reference genomes
naturepoker/Telehalo
A spin on the Tele* scripts, this time processing and comparing protein sequence input against those of Halobacterium genus
naturepoker/TelePlasmid
A script suite for analyzing protein sequences against NCBI Plasmids database