nazlikara

nazlikara's Stars

• MohmedSoudy/training-collection

  Collection of bioinformatics training materials

  173

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python41947

• wdecoster/nanopack

  An overview of all nanopack tools

  Language:Python20714

• biocorecrg/master_of_pores

  Nextflow pipeline for analysis of direct RNA Nanopore reads

  Language:Nextflow8916

• giesselmann/nanopype

  Snakemake pipelines for nanopore sequencing data archiving and processing

  Language:Python8815

• vibaotram/baseDmux

  snakemake workflow for basecalling and demultiplexing of ONT sequencing data

  Language:Python61

• SouthGreenPlatform/culebrONT

  A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.

  Language:Python368

• nanoporetech/pipeline-structural-variation

  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

  Language:Python11316

• nanoporetech/katuali

  Analysis pipelines from Oxford Nanopore Technologies' Research Division

  Language:Python507

• nanoporetech/pomoxis

  Analysis components from Oxford Nanopore Research

  Language:Python9423

• HadrienG/tutorials

  :books: Various bioinformatics tutorials

  5738

• nazlikara/tutorials

  :books: Various bioinformatics tutorials

  1

• sib-swiss/training-collection

  Collection of bioinformatics training materials

  Language:Python972182

• cribioinfo/ExScaliburSMD

  Language:Python62

• broadinstitute/warp

  WDL Analysis Research Pipelines

  Language:WDL20095

• gatk-workflows/gatk4-genome-processing-pipeline

  Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the link the ReadMe to obtain the latest version of the workflow.

  Language:wdl2541

• Sydney-Informatics-Hub/Fastq-to-BAM

  Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

  Language:Shell197

• samtools/hts-specs

  Specifications of SAM/BAM and related high-throughput sequencing file formats

  Language:TeX645174

• shahcompbio/mutationseq

  Software for somatic SNV detection using next generation sequencing (NGS) data.

  Language:C++95

• gatk-workflows/gatk4-somatic-cnvs

  This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

  Language:wdl4320

• Illumina/manta

  Structural variant and indel caller for mapped sequencing data

  Language:C++404154

• genome/pindel

  Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

  Language:C++16389

• KHP-Informatics/ALSgeneScanner

  61