To remove a submodule you need to:
Delete the relevant section from the .gitmodules file. Stage the .gitmodules changes git add .gitmodules Delete the relevant section from .git/config. Run git rm --cached path_to_submodule (no trailing slash). Run rm -rf .git/modules/path_to_submodule (no trailing slash). Commit git commit -m "Removed submodule " Delete the now untracked submodule files rm -rf path_to_submodule