Pinned Repositories
bds_atac
ATAC-seq processing pipeline
bigWigFeaturize
bioconda-recipes
Conda recipes for the bioconda channel.
DREAM_invivo_tf_binding_prediction_challenge_baseline
DREAM_tfbinding_challenge
grit
idr
IDR
pyDNAbinding
A toolkit for modelling DNA binding from sequence and experimental data.
rampage_pipeline
regulatory_network_tools
Code for identifying regulatory networks.
nboley's Repositories
nboley/idr
IDR
nboley/grit
nboley/DREAM_invivo_tf_binding_prediction_challenge_baseline
nboley/pyDNAbinding
A toolkit for modelling DNA binding from sequence and experimental data.
nboley/rampage_pipeline
nboley/regulatory_network_tools
Code for identifying regulatory networks.
nboley/DREAM_tfbinding_challenge
nboley/bds_atac
ATAC-seq processing pipeline
nboley/bigWigFeaturize
nboley/bioconda-recipes
Conda recipes for the bioconda channel.
nboley/datamanifest
Python package for maintaining and versioning collections of files.
nboley/fragments_h5
nboley/genome_structure_correction
nboley/i3
store configuration related to i3
nboley/irv
A simple python script for instant-runoff voting
nboley/keras
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.
nboley/machinelearningexperiments
Playing around w/ different machine learning algorithms
nboley/scCRC_continuum
nboley/SELEX
Code for fitting SELEX models.
nboley/statmap
nboley/SynapseChallengeTemplates
A collection of templates for use by those writing Synapse challenge scoring applications. The aim is to provide executable examples in various languages (Python, R, Java).
nboley/TF_binding
code for exploring TF binding models
nboley/Theano
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.