ncats/cellranger-snakemake

Issues

• Restore %dopar% functionality for main processing loop of seurat objects.

  #9 opened 4 years ago
  3

• Cleanup intermediate files (could be done using native snakemake nomenclature)

  #8 opened 4 years ago
  0

• Add filtration of various 'noisy' genes

  #7 opened 4 years ago
  2

• Add EnrichR after FindAllMarkers

  #6 opened 4 years ago
  1

• Add FindAllMarkers and create various heatmaps

  #5 opened 4 years ago
  1

• Create tSNE, UMAP plots as pdfs

  #4 opened 4 years ago
  4

• Create SOP describing setup, pipeline execution, etc.

  #3 opened 4 years ago
  1

• Default to using the biomart file found in ./bin, recreate in workdir if asked.

  #2 opened 4 years ago
  1