Pinned Repositories
bioportal-project
Serves to consolidate (in Zenhub) all public issues in BioPortal
bioportal_web_ui
A Rails application for biological ontologies
goo
Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.
kg-bioportal
BioPortal, as a Knowledge Graph
ncbo_annotator
To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.
ncbo_rest_sample_code
Sample code that demonstrates the use of the NCBO REST services
ontologies_api
Hypermedia API for NCBO's ontology-related projects
ontologies_linked_data
Models and serializers for ontologies and related artifacts backed by 4store
sparql-code-examples
Java, Perl, Python, Javascript, Ruby, etc. examples to query alphasparql.bioontology.org
umls2rdf
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
National Center for Biomedical Ontology's Repositories
ncbo/umls2rdf
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
ncbo/ncbo_rest_sample_code
Sample code that demonstrates the use of the NCBO REST services
ncbo/sparql-code-examples
Java, Perl, Python, Javascript, Ruby, etc. examples to query alphasparql.bioontology.org
ncbo/ontologies_api
Hypermedia API for NCBO's ontology-related projects
ncbo/bioportal_web_ui
A Rails application for biological ontologies
ncbo/ncbo_annotator
To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.
ncbo/ontologies_linked_data
Models and serializers for ontologies and related artifacts backed by 4store
ncbo/goo
Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.
ncbo/bioportal-project
Serves to consolidate (in Zenhub) all public issues in BioPortal
ncbo/kg-bioportal
BioPortal, as a Knowledge Graph
ncbo/ncbo_ontology_recommender
A ruby application that allows to obtain recommendations for the most relevant ontologies based on an excerpt from a biomedical text or a list of keywords
ncbo/owlapi_wrapper
A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.
ncbo/virtual_appliance
Bioportal Virtual Appliance
ncbo/BioPortal-to-KGX
Assemble a BioPortal Knowledge Graph
ncbo/sparql-client
SPARQL client for Ruby.
ncbo/4store
4store for BioPortal
ncbo/ontolobridge_api_client
Ontolobridge REST API client
ncbo/pubmed_xml2rdbms
Loads citation records from the annual MEDLINE/PubMed XML format distribution into a MySQL table
ncbo/biomixer
BioMixer
ncbo/ncbo_cron
Jobs that run on a regular basis in the NCBO infrastructure
ncbo/ontologies_api_ruby_client
A Ruby client for accessing NCBO's hypermedia api
ncbo/ontoportal_utilities
A set of scripts for benchmarking and troubleshooting issues with NCBO software
ncbo/resource_access_tools
Java-based code for running the Resource Access Tool population
ncbo/bioportal-sparql-proxy
This is a django app that acts as a proxy for BioPortal's public triple store. It uses a modified version of the SNORQL browser to help the navigation across graphs and codemirror for syntax highlighting.
ncbo/ncbo.github.io
ncbo/ncbo_migration
Scripts for migrating data from older NCBO systems to newer ones
ncbo/resource_index
Library for working with NCBO's Resource Index backend system
ncbo/documentation-dev
A (possibly) temporary location for shared developer documentation.
ncbo/ontoportal_docker
Scripts for running and developing ontoportal with docker
ncbo/reactjs_sandbox
Experimental React code for issuing ontology change requests