ncsa/phyloflow

Issues

• Error when running run_pyclone_vi_example1.sh

  #49 opened 2 years ago by nakane-scc
  3

• Setup repo for independent Viz

  #42 opened 3 years ago by pgroves
  1

• public url for chad's current vis demo

  #39 opened 3 years ago by pgroves
  1

• VEP official docker image as a WDL step

  #20 opened 3 years ago by pgroves
  2

• Terra account connected to our GCP account

  #23 opened 4 years ago by pgroves
  2

• vep-task only works with Cromwell, not miniwdl

  #35 opened 4 years ago by pgroves
  1

• Sort out Cromwell vs. Miniwdl with installation instructions

  #37 opened 4 years ago by pgroves
  0

• vcf_transform sometimes pulling published image even when newer version has been built locally

  #34 opened 4 years ago by pgroves
  0

• Physigs input transformer

  #32 opened 4 years ago by pgroves
  0

• Official VEP image doesn't work with miniwdl (but does work with cromwell)

  #33 opened 4 years ago by pgroves
  0

• QC: Does AML output we generate match the paper

  #31 opened 4 years ago by pgroves
  0

• Document parameters using wdl metadata

  #30 opened 4 years ago by pgroves
  0

• SPRUCE on Terra

  #21 opened 4 years ago by pgroves
  1

• Docker crashes in step 2 (pyclone)

  #13 opened 4 years ago by ChuanyiZ
  1

• Remove pyclone as an option (always use pyclone-vi)

  #26 opened 4 years ago by pgroves
  1

• Automate pushing README's to ElasticContainerRegistry repo's for docker images

  #27 opened 4 years ago by pgroves
  0

• Document pull request process

  #10 opened 4 years ago by pgroves
  0

• Fix tabs/spaces in wdl files

  #25 opened 4 years ago by pgroves
  0

• Phyloflow full workflow for summer

  #24 opened 4 years ago by pgroves
  1

• Entire example1 workflow on Terra

  #22 opened 4 years ago by pgroves
  0

• Document example files for viz user-stories

  #18 opened 4 years ago by pgroves
  0

• Multisample SMV support

  #17 opened 4 years ago by pgroves
  0

• copy number abberation support

  #16 opened 4 years ago by pgroves
  0

• Specify git SHA when checking out from github in Dockerfiles

  #15 opened 4 years ago by pgroves
  0

• Make PRs target 'develop' branch instead of 'master'

  #12 opened 4 years ago by pgroves
  1

• Fix 'copy number' params for pyclone

  #9 opened 4 years ago by pgroves
  0

• Specify version numbers for docker, conda, miniwdl

  #8 opened 4 years ago by pgroves
  0

• Need LICENSE file in toplevel

  #4 opened 4 years ago by pgroves
  1