Pinned Repositories
modules
MSKCC Reis-Filho Lab pipeline thingy
ascat
ASCAT copy number R package
CNtu
Copy Number tree utilities (CNtu)
distribution_diagrams
R-script for generating canonical diagrams of distributions to be used to describe Bayesian hierarchical models.
GAP
Genome Alteration Print (GAP)
genotype_variants
Project to genotype SNV, INDEL and SV.
innovation-lab
MSKCC CMO Innovation Lab
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
MSK-BYL-NC
Alterations in PTEN and ESR1 promote clinical resistance to alpelisib plus aromatase inhibitors
MSK-GRAIL-TECHVAL
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
ndbrown6's Repositories
ndbrown6/MSK-GRAIL-TECHVAL
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
ndbrown6/GAP
Genome Alteration Print (GAP)
ndbrown6/MSK-BYL-NC
Alterations in PTEN and ESR1 promote clinical resistance to alpelisib plus aromatase inhibitors
ndbrown6/ascat
ASCAT copy number R package
ndbrown6/CNtu
Copy Number tree utilities (CNtu)
ndbrown6/distribution_diagrams
R-script for generating canonical diagrams of distributions to be used to describe Bayesian hierarchical models.
ndbrown6/genotype_variants
Project to genotype SNV, INDEL and SV.
ndbrown6/innovation-lab
MSKCC CMO Innovation Lab
ndbrown6/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
ndbrown6/modules
ndbrown6/MSK-MM-FGPZ
Cancer causative mutations occurring in early embryogenesis
ndbrown6/MSK-ORG-CS
ndbrown6/signature.tools.lib
R package containing useful functions for mutational signature analysis