Pinned Repositories
AIV_Pipe-Introduction
annotation
augur
Pipeline components for real-time virus analysis
auspice
Web app for visualizing pathogen evolution
autm-rb
Another theme for Jekyll
baltic
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
CIRCOS_PanGenome
Calculates overlap of multiple genomes and prepares files for CIRCOS visualization software
globalCoralMicrobiomes
Statistical and graphical analysis of coral microbiomes. For a detailed post explaining these, head to:
mappd
Metagenomic Analysis Pipeline for Pathogen Discovery
seq_tools
useful python scripts for NGS data manipulation
neavemj's Repositories
neavemj/globalCoralMicrobiomes
Statistical and graphical analysis of coral microbiomes. For a detailed post explaining these, head to:
neavemj/auspice
Web app for visualizing pathogen evolution
neavemj/CIRCOS_PanGenome
Calculates overlap of multiple genomes and prepares files for CIRCOS visualization software
neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery
neavemj/seq_tools
useful python scripts for NGS data manipulation
neavemj/augur
Pipeline components for real-time virus analysis
neavemj/autm-rb
Another theme for Jekyll
neavemj/baltic
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
neavemj/carp_browser
neavemj/core_genome_scripts
neavemj/fit_tools
tools for analysing garmin fit files
neavemj/geel_crim
neavemj/genome_tools
neavemj/JEV_assembly_pipe
Snakemake pipeline to assemble JEV genomes from primer tiling data
neavemj/kmer_tools
Set of utilities for analysing kmer profiles in NGS
neavemj/MED-Paper-Figure-6
A bunch of embarrassing ad-hoc python scripts to generate the alluvial diagram
neavemj/metagenomicBinner
Genome binner for host-associated bacteria
neavemj/MicrobimePlots
Analysis of coral microbiome 16S data using R and phyloseq. A detailed post is available here:
neavemj/microbiomeMap
A detailed post on this analysis is available here:
neavemj/miscPython
neavemj/narratives
Narrative markdown files accessed via nextstrain.org/narratives/x
neavemj/neavemj.github.io
neavemj/nextstrain_builds
neavemj/normalizing_RNA-Seq
neavemj/seleniumCamp
neavemj/sphinx-themes.org
https://sphinx-themes.org
neavemj/symBIN
neavemj/tv_scraper
neavemj/veggie_lapse
neavemj/vibrioPhages