Installation of mimseq package

[Phontia]

Dear all,

I'm trying to install the mimseq package by following your STAR protocol.

However, when testing the installation by using the commands:

> mimseq –version

> mimseq –help

I get the following output

           _                 _   ____  _   _    _                   
 _ __ ___ (_)_ __ ___       | |_|  _ \| \ | |  / \   ___  ___  __ _ 
| '_ ` _ \| | '_ ` _ \ _____| __| |_) |  \| | / _ \ / __|/ _ \/ _` |
| | | | | | | | | | | |_____| |_|  _ <| |\  |/ ___ \\__ \  __/ (_| |
|_| |_| |_|_|_| |_| |_|      \__|_| \_\_| \_/_/   \_\___/\___|\__, |
                                                                 |_|

 Modification-induced misincorporation analysis of tRNA sequencing data

usage: mimseq [options] sample data
mimseq: error: the following arguments are required: -s/--species, --control-condition, -n/--name

Could you please help me understand what went wrong?

Best,
Andy

[nedialkova-lab]

Hi Andy - try mimseq --version and mimseq --help.

[Phontia]

Ah thank you! It is properly installed then it seems :)

Sorry for the simple mistake.

Best,
Andy

[nedialkova-lab]

No worries - happy to hear the installation worked!