nedialkova-lab/mim-tRNAseq

Issues

• Formatting of tRNA FASTA reference file

  #70 opened 3 months ago by Phontia
  9

• Installation of mimseq package

  #68 opened 3 months ago by Phontia
  3

• Error During Final Deconvolution with Clustering Enabled for E. coli tRNA Analysis in MimSeq

  #69 opened 3 months ago by AteeshaNegi
  2

• GMAP version 2017-11-15

  #67 opened a year ago by Futa0908
  4

• Set up E2E test with continuous integration

  #58 opened 9 months ago by kelly-sovacool
  3

• Error occur when"Parsing Modomics JSON data"

  #45 opened a year ago by wuxujia-dev
  15

• Interpretation of output files

  #65 opened a year ago by pawanchk
  2

• GSNAP Ver. 2019-02-26 Installation issues

  #66 opened a year ago by Futa0908
  2

• Problems about match to Modomics dataset

  #48 opened a year ago by Yanhui-1008
  12

• modifications outdated?

  #64 opened a year ago by piechottam
  2

• Error in differential expression analysis

  #62 opened a year ago by kelly-sovacool
  2

• cmalign dependency when installing from source

  #61 opened a year ago by kelly-sovacool
  4

• Incomplete refactor in tRNAtools

  #59 opened a year ago by kelly-sovacool
  1

• bug: out_dir is a boolean in modsToSNPIndex()

  #56 opened a year ago by kelly-sovacool
  0

• Installation errors

  #49 opened a year ago by pawanchk
  18

• usearch vs vsearch

  #31 opened a year ago by TomSmithCGAT
  11

• A potential problem when working on self-made tRNA fasta

  #43 opened a year ago by ruixuan-zhang
  4

• Error in the Alignment step

  #47 opened a year ago by marctormo
  2

• Issue after update

  #46 opened a year ago by joegeorgeson
  11

• error when install mimseq through mamba: ModuleNotFoundError: No module named 'conda._vendor.auxlib'

  #44 opened a year ago by AiweiWu
  1

• multiprocessing.pool.RemoteTraceback error

  #42 opened a year ago by huLi2023
  5

• KeyError: "sequence" during Determining non-deconvoluted clusters due to insufficient coverage at mismatches

  #41 opened a year ago by ruixuan-zhang
  8

• Dockerized mim-tRNAseq

  #40 opened 2 years ago by joegeorgeson
  10

• subprocess.CalledProcessError

  #37 opened 2 years ago by Squirrelity
  7

• Isodecoder column in counts incorrect

  #35 opened 2 years ago by TomSmithCGAT
  3

• KeyError

  #34 opened 2 years ago by kopardev
  2

• Docker?

  #32 opened 2 years ago by kopardev
  2

• Error

  #33 opened 2 years ago by kopardev
  7

• Conda Installation - R version problem

  #26 opened 2 years ago by cyken6621
  2

• non-zero exist status 9 error

  #30 opened 3 years ago by nepena
  2

• Run it for other species

  #29 opened 3 years ago by AnneHoffmann
  3

• Questions about Spikein

  #28 opened 3 years ago by AngLiRNA
  1

• Ask a fundamental question about the code

  #20 opened 3 years ago by songrunxian
  0

• question in CCAanalysis output

  #24 opened 3 years ago by oneleaf425
  2

• CalledProcessError: Command '['gsnap'.....] returned non-zero exit status 9.

  #27 opened 3 years ago by AngLiRNA
  2

• AttributeError: 'DataFrame' object has no attribute 'name'

  #23 opened 3 years ago by Pablolo99
  2

• Read mapping vs. alignment

  #22 opened 3 years ago by krdav
  4

• Error with tRNAscan-SE format results

  #21 opened 3 years ago by Pablolo99
  1

• splitClusters.py 'KeyError sequence' error while running sample data

  #15 opened 3 years ago by cyken6621
  12

• Problems with gmap_build

  #19 opened 3 years ago by MKoesters
  1

• nothing provides pyfiglet needed by mimseq-0.2.5.3-pyr40_0

  #17 opened 3 years ago by MKoesters
  2

• IndexError: Too many levels: Index has only 1 level, not 2

  #16 opened 3 years ago by Ashring-Tang
  5

• KeyError in unknownMods(), mmquant.py

  #9 opened 3 years ago by uschwartz
  5

• Threshold of the Fig4A and B

  #14 opened 3 years ago by YueZhang2019
  3

• OSError: [Errno 8] Exec format error: 'usearch'

  #13 opened 3 years ago by Ashring-Tang
  1

• mimseq testing error: No such file or directory: 'cmalign'

  #12 opened 3 years ago by yc-2000
  1

• some inssues about usearch

  #11 opened 3 years ago by Ashring-Tang
  1

• figure of anticodon_vst_hp.png

  #8 opened 3 years ago by YueZhang2019
  5

• A basic issue about analysis SAMPLE DATA by mimseq

  #10 opened 3 years ago by Ashring-Tang
  2

• mmQuant.py error

  #7 opened 3 years ago by onuryukselen
  10