kelly-sovacool

Bioinformatics Software Engineer

@CCBRRemote from Ann Arbor, MI, USA

Pinned Repositories

curriculum-notebooks
Jupyter notebooks for teaching Python for Data Science. Used by our Girls Who Code Club & Summer Experience.
Language:Jupyter Notebook10 10 1812
asm-msystems
Quarto template for ASM mSystems
Language:TeX5 2 40
quarto-manuscript
Quarto template for manuscripts & preprints
Language:TeX6 2 01
rackham
Quarto template for U-M Rackham Dissertations
Language:TeX4 2 23
snakemake_hpc_mwe
A minimal working example of using Snakemake on an HPC running PBS-torque or SLURM.
Language:Shell5 2 21
mikropml
User-Friendly R Package for Supervised Machine Learning Pipelines
Language:R52 9 15016
mikropml-snakemake-workflow
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
Language:Python11 8 222
schtools
Schloss Lab Tools for Reproducible Microbiome Research 💩
Language:R28 14 2111
intro-curriculum-r
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
Language:HTML9 10 8612

kelly-sovacool's Repositories

kelly-sovacool/quarto-manuscript
Quarto template for manuscripts & preprints
Language:TeX6 2 01
kelly-sovacool/asm-msystems
Quarto template for ASM mSystems
Language:TeX5 2 40
kelly-sovacool/rackham
Quarto template for U-M Rackham Dissertations
Language:TeX4 2 23
kelly-sovacool/kelly-sovacool.github.io
My personal website, created with Quarto.
Language:Python2 3 10
kelly-sovacool/latex-cv
My curriculum vitae in LaTeX
Language:TeX2 2 12
kelly-sovacool/pkg-downloads
A report of mikropml package download counts from cranlogs
2 2 0
kelly-sovacool/advent-of-code
My solutions to the Advent of Code puzzles.
Language:Jupyter Notebook1 1 0
kelly-sovacool/asm-microbe-2022
Abstract & Poster for ASM Microbe 2022
Language:Python
kelly-sovacool/BIOINF576-ci
BIOINF 576 materials on continuous integration
kelly-sovacool/bionitio-python
Language:Python
kelly-sovacool/bionitio-r
Language:R
kelly-sovacool/figure-convert-reprex
Example for reducing repetitive snakemake code with a function & dictionary
Language:Python2 0
kelly-sovacool/kelly-sovacool
My GitHub profile
1 01
kelly-sovacool/kelly-sovacool.r-universe.dev
2 1
kelly-sovacool/mim-tRNAseq
Modification-induced misincorporation tRNA sequencing
Language:Scheme
kelly-sovacool/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow1 0
kelly-sovacool/mothur
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
kelly-sovacool/mothur.github.io
wiki for the mothur software package
Language:CSS1 0
kelly-sovacool/phd-defense
Presentation for my PhD defense seminar
Language:SCSS
kelly-sovacool/phd-diss
My Bioinformatics PhD dissertation
Language:R3 0
kelly-sovacool/quarto-site-example
An example quarto website for curricula
Language:CSS
kelly-sovacool/r-mikropml-feedstock
A conda-smithy repository for r-mikropml.
Language:Shell1 0
kelly-sovacool/sandbox
a sandbox for testing & exploration
Language:Dockerfile2 0
kelly-sovacool/schlosslab.github.io
The website for the Schloss Lab at the University of Michigan
Language:HTML1 0
kelly-sovacool/sovacool.art
Kate Sovacool's personal website
Language:R2 0
kelly-sovacool/sovatools
Sovacool's Tools: miscellanea with no other obvious home
Language:R2 0
kelly-sovacool/test-mkdocs
reprex for mkdocs bug in bold styling
kelly-sovacool/thesis-umich
LaTeX template for University of Michigan Thesis
kelly-sovacool/UMich_Dissertation_Template
University of Michigan Rackham Graduate School Dissertation Template (unofficial, 2020)
Language:TeX
kelly-sovacool/vitae
R Markdown Résumés and CVs