Project Nemaload
A project circa 2011–2013 to build electro-optical neural interrogation tools for "uploading" nematodes (C. elegans): to create neurally equivalent simulations.
San Francisco, CA
Pinned Repositories
Blender2NeuroML
Conversion script to bring neuron models drawn in Blender into NeuroML format
CElegansNeuroML
NeuroML based C elegans model, contained in a neuroConstruct project
compeval-task-test0
Simple test task for compeval
LFDisplay
GUI for a light field microscope
nemashow
A browser-based HDF5 image viewer
PoBAM
PoBAM paper
pose_extraction
Extracting the 3D pose of a worm (as a spline) from a confocal stack, and misc. related code
sigextract
Signal extraction toolchain
theory
Theory of NEMALOAD: what kind of mathematical objects are under scientific consideration, and how can we learn about them through experiment?
workflow-utils
Utilities for the computational workflow
Project Nemaload's Repositories
nemaload/nemashow
A browser-based HDF5 image viewer
nemaload/theory
Theory of NEMALOAD: what kind of mathematical objects are under scientific consideration, and how can we learn about them through experiment?
nemaload/LFDisplay
GUI for a light field microscope
nemaload/pose_extraction
Extracting the 3D pose of a worm (as a spline) from a confocal stack, and misc. related code
nemaload/workflow-utils
Utilities for the computational workflow
nemaload/Blender2NeuroML
Conversion script to bring neuron models drawn in Blender into NeuroML format
nemaload/CElegansNeuroML
NeuroML based C elegans model, contained in a neuroConstruct project
nemaload/compeval
Computation Evaluator
nemaload/compeval-task-test0
Simple test task for compeval
nemaload/lua-misc
nemaload/PoBAM
PoBAM paper
nemaload/sigextract
Signal extraction toolchain
nemaload/toy_system
A little system of Izhikevich neurons to test system-identification approaches on.
nemaload/docker
Docker - the Linux container runtime