/patient_demo_on_transcriptomics

Demo for connecting synthetic patient data + OMICs data for GDS

Primary LanguageJupyter Notebook

pharma_demo

Lipidomics data

https://github.com/ahmohamed/lipidr/blob/master/inst/extdata/brca_matrix.csv https://www.lipidr.org/

GDS5167 dataset

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE54350

Type 2 diabetic and hyperglycemic pancreatic islets (63 patients)

Analysis of pancreatic islets from type 2 diabetes (T2D) and non-diabetic cadaver donors. Glycemic control (HbA1c) levels also measured from the same individuals (normoglycemic: HbA1c < 6%; hyperglycemic: HbA1c ≥ 6%). Results provided insight into molecular basis of islet dysfunction in T2D. [We integrated our data to form a rank list of putative T2D genes, of which CHL1, LRFN2, RASGRP1, and PPM1K were validated in INS-1 cells to influence insulin secretion, whereas GPR120 affected apoptosis in islets. ]

https://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS4337

Indian Liver Patient Dataset

This data set contains 416 liver patient records and 167 non liver patient records.The data set was collected from test samples in North East of Andhra Pradesh, India. 'is_patient' is a class label used to divide into groups(liver patient or not). This data set contains 441 male patient records and 142 female patient records.

Any patient whose age exceeded 89 is listed as being of age "90". https://www.kaggle.com/datasets/jeevannagaraj/indian-liver-patient-dataset?select=Indian+Liver+Patient+Dataset+%28ILPD%29.csv

Diabetes-Predictor-kNN

https://www.kaggle.com/code/karansinghreen/diabetes-predictor-knn/data?select=diabetes.csv