nesi/snakemake_workshop

Snakemake workshop

Online workflow code-along: Introduction to Snakemake

Workshop material : https://nesi.github.io/snakemake_workshop/

Workshop

Workshop sections:

• 01 - Introduction
• 02 - Setup
• 03 - Create a basic workflow
• 04 - Leveling up your workflow
• 05 - We want more!

Appendices:

• Setup for running on your machine using conda
• Use conda environments

Start the workshop!