Network Neuroscience Lab

abagen

A toolbox for working with Allen Human Brain Atlas microarray expression data

conn2res

A reservoir computing toolbox for neuroscientists

hansen_crossdisorder_vulnerability

Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disorder cortical abnormalities"

hansen_many_networks

Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease"

hansen_receptors

Data and code supporting Hansen et al., 2022 "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"

markello_ppmisnf

Code supporting the recent preprint Markello et al., 2020

netneurotools

Useful tools from the Network Neuroscience Lab

neuromaps

A toolbox for comparing brain maps

pypyls

A Python implementation of Partial Least Squares (PLS) decomposition

suarez_neuromorphicnetworks

Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()

netneurolab/neuromaps

A toolbox for comparing brain maps

netneurolab/conn2res

A reservoir computing toolbox for neuroscientists

netneurolab/hansen_receptors

Data and code supporting Hansen et al., 2022 "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"

netneurolab/netneurotools

Useful tools from the Network Neuroscience Lab

netneurolab/pypyls

A Python implementation of Partial Least Squares (PLS) decomposition

netneurolab/suarez_neuromorphicnetworks

Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()

netneurolab/markello_ppmisnf

Code supporting the recent preprint Markello et al., 2020

netneurolab/hansen_many_networks

Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease"

netneurolab/hansen_crossdisorder_vulnerability

Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disorder cortical abnormalities"

netneurolab/hansen_genescognition

Code supporting Hansen et al., 2021 "Mapping gene transcription and neurocognition across human neocortex".

netneurolab/markello_spatialnulls

Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)

netneurolab/abagen

A toolbox for working with Allen Human Brain Atlas microarray expression data

netneurolab/bazinet_assortativity

Code supporting Bazinet et al., 2023, "Assortative mixing in micro-architecturally annotated brain connectomes" (Nature Communications))

netneurolab/hansen_brainstemfc

Data and code supporting Hansen et al., 2023 bioRxiv "Integrating brainstem and cortical functional architectures"

netneurolab/ipn-summer-school

netneurolab/shafiei_megdynamics

Code supporting Shafiei et al., 2023 "Neurophysiological signatures of cortical micro-architecture".

netneurolab/markello_transcriptome

Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)

netneurolab/shafiei_megfmrimapping

Code supporting Shafiei et al., 2022 "Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal cortex".

netneurolab/hansen_gene-receptor

Data and code in support of Hansen et al., 2022 "Correspondence between gene expression and neurotransmitter receptor and transporter density in the human brain", NeuroImage

netneurolab/liu_fc-pyspi

netneurolab/luppi-neurosynth-control

Code for Luppi et al (2024) Nature Biomedical Engineering

netneurolab/suarez_connectometaxonomy

netneurolab/bazinet_multiscale

Code and documentation supporting Bazinet et al., 2020, "Multiscale communication in cortico-cortical networks"

netneurolab/Farahani_ALS

Network spreading and local biological vulnerability in amyotrophic lateral sclerosis

netneurolab/liu_meg-scfc

netneurolab/markello_neuromaps

netneurolab/marmoset_connectome

netneurolab/milisav_strength_nulls

Data and code supporting Milisav et al., 2024 "A simulated annealing algorithm for randomizing weighted networks"

netneurolab/nnlab-intro-to-ds

netneurolab/netneurolab.github.io

Network Neuroscience Lab Website