Network Neuroscience Lab

abagen

A toolbox for working with Allen Human Brain Atlas microarray expression data

conn2res

A reservoir computing toolbox for neuroscientists

hansen_crossdisorder_vulnerability

Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disorder cortical abnormalities"

hansen_many_networks

Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease"

hansen_receptors

Data and code supporting Hansen et al., 2022 Nature Neuroscience "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"

markello_ppmisnf

Code supporting the recent preprint Markello et al., 2020

netneurotools

Useful tools from the Network Neuroscience Lab

neuromaps

A toolbox for comparing brain maps

pypyls

A Python implementation of Partial Least Squares (PLS) decomposition

suarez_neuromorphicnetworks

Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()

netneurolab/neuromaps

A toolbox for comparing brain maps

netneurolab/conn2res

A reservoir computing toolbox for neuroscientists

netneurolab/hansen_receptors

Data and code supporting Hansen et al., 2022 Nature Neuroscience "Mapping neurotransmitter systems to the structural and functional organization of the human neocortex"

netneurolab/netneurotools

Useful tools from the Network Neuroscience Lab

netneurolab/pypyls

A Python implementation of Partial Least Squares (PLS) decomposition

netneurolab/suarez_neuromorphicnetworks

Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()

netneurolab/markello_ppmisnf

Code supporting the recent preprint Markello et al., 2020

netneurolab/hansen_many_networks

Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease"

netneurolab/abagen

A toolbox for working with Allen Human Brain Atlas microarray expression data

netneurolab/bazinet_assortativity

Code supporting Bazinet et al., 2023, "Assortative mixing in micro-architecturally annotated brain connectomes" (Nature Communications))

netneurolab/hansen_brainstemfc

Data and code supporting Hansen et al., 2024, Nature Neuroscience "Integrating brainstem and cortical functional architectures"

netneurolab/shafiei_megdynamics

Code supporting Shafiei et al., 2023 "Neurophysiological signatures of cortical micro-architecture".

netneurolab/markello_transcriptome

Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)

netneurolab/milisav_strength_nulls

Data and code supporting Milisav et al., 2024 "A simulated annealing algorithm for randomizing weighted networks"

netneurolab/shafiei_megfmrimapping

Code supporting Shafiei et al., 2022 "Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal cortex".

netneurolab/ceballos_neuropeptide-signaling

Repository for the project "Mapping neuropeptide signaling in the human brain"

netneurolab/hansen_synaptome

Data and code supporting Hansen et al., 2025, bioRxiv "Synaptome architecture shapes regional dynamics in the mouse brain"

netneurolab/Farahani_ALS

Network spreading and local biological vulnerability in amyotrophic lateral sclerosis

netneurolab/Farahani_Blood_Perfusion

Cerebral blood perfusion across biological systems and the human lifespan

netneurolab/liu_fc-pyspi

netneurolab/luppi-neurosynth-control

Code for Luppi et al (2024) Nature Biomedical Engineering

netneurolab/suarez_connectometaxonomy

netneurolab/bazinet_multiscale

Code and documentation supporting Bazinet et al., 2020, "Multiscale communication in cortico-cortical networks"

netneurolab/liu_meg-scfc

netneurolab/marmoset_connectome

netneurolab/luppi-cognitive-matching

MATLAB code for Luppi et al (2025) "General anaesthesia reduces the uniqueness of brain functional connectivity across individuals and across species", Nature Human Behaviour

netneurolab/luppi-genes-receptors-macaque

MATLAB code for Luppi et al (2024) "Benchmarking macaque brain gene expression for horizontal and vertical translation"

netneurolab/bazinet_spins

Code supporting Bazinet et al., 2024, "The effect of spherical projection on spin tests for brain maps" (bioRxiv)

netneurolab/netneurolab.github.io

Network Neuroscience Lab Website

netneurolab/pypmi

A very small toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)