NeuroML

amid

Awesome Medical Imaging Datasets

bev

Flexible version control for files and folders

connectome

A library for datasets containing heterogeneous data

deep_pipe

A collection of tools for deep learning experiments

imops

Efficient parallelizable algorithms for multidimensional arrays to speed up your data pipelines

inverse_weighting

Code release for the paper B. Shirokikh, A. Shevtsov et al. "Universal Loss Reweighting to Balance Lesion Size Inequality in 3D Medical Image Segmentation" (MICCAI 2020, oral).

reskit

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

resnet_cnn_mri_adni

Code for Residual and Plain Convolutional Neural Networks for 3D Brain MRI Classification paper

tarn

An insanely customizable framework for key-value storage 💾

thunder

🌩️ The Deep Learning framework based on Lightning

neuro-ml/resnet_cnn_mri_adni

Code for Residual and Plain Convolutional Neural Networks for 3D Brain MRI Classification paper

neuro-ml/deep_pipe

A collection of tools for deep learning experiments

neuro-ml/amid

Awesome Medical Imaging Datasets

neuro-ml/reskit

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

neuro-ml/inverse_weighting

Code release for the paper B. Shirokikh, A. Shevtsov et al. "Universal Loss Reweighting to Balance Lesion Size Inequality in 3D Medical Image Segmentation" (MICCAI 2020, oral).

neuro-ml/imops

Efficient parallelizable algorithms for multidimensional arrays to speed up your data pipelines

neuro-ml/domain_shift_anatomy

Code release for the paper I. Zakazov, B. Shirokikh et al. "Anatomy of Domain Shift Impact on U-Net Layers in MRI Segmentation" (MICCAI 2021, oral).

neuro-ml/connectome

A library for datasets containing heterogeneous data

neuro-ml/midline-shift-detection

Full code for the paper "Incorporating Task-Specific Structural Knowledge into CNNs for Brain Midline Shift Detection"

neuro-ml/dicom-csv

Utils for gathering, aggregation and handling metadata from DICOM files

neuro-ml/straighten

Interpolation along multidimensional curves

neuro-ml/thunder

🌩️ The Deep Learning framework based on Lightning

neuro-ml/vertebral-fractures-severity

Repository for the paper "Keypoints Localization for Joint Vertebra Detection and Fracture Severity Quantification"

neuro-ml/bev

Flexible version control for files and folders

neuro-ml/COVID-19-Triage

neuro-ml/connectome-tutorials

neuro-ml/anchor-free-genant

neuro-ml/BIDSTransformers

BIDS Transformers for neuroimaging data preprocessing based on BIDS and sklearn architecture

neuro-ml/low-resolution

Code release for the paper B. Shirokikh, A. Shevtsov et al. "Accelerating 3D Medical Image Segmentation by Adaptive Small-Scale Target Localization"

neuro-ml/brats

BraTS competition

neuro-ml/edr-gp

A library for sparse Effective (functional) Dimensionality Reduction via Gaussian Processes

neuro-ml/structural-connectome-validation-pairwise

Repository for paper 'Structural Connectome Validation Using Pairwise Classification'

neuro-ml/tarn

An insanely customizable framework for key-value storage 💾

neuro-ml/curve-detection

neuro-ml/dpipe_mnist

A short deep_pipe example

neuro-ml/dpipe_tutorial_notebooks

neuro-ml/PRNI2016

neuro-ml/pycharm-connectome-support

Connectome Support for PyCharm

neuro-ml/scipy_proceedings

Tools used to generate the SciPy conference proceedings

neuro-ml/static-yoga