neurobagel/api

Issues

• Broken link to environment variable docs in README

  #339 opened 3 months ago by alyssadai
  0

• Hard code values for deprecated environment variables

  #338 opened 3 months ago by alyssadai
  1

• Queries for `is_control=False` no longer work with restriction against unbound variables

  #332 opened 3 months ago by alyssadai
  0

• Subjects missing imaging session excluded from result?

  #331 opened 3 months ago by alyssadai
  2

• Env var in tests

  #316 opened 6 months ago by rmanaem
  2

• Subjects missing imaging session excluded from result?

  #330 opened 3 months ago by alyssadai
  1

• [BUG] Healthy Control results are incorrect

  #324 opened 4 months ago by surchs
  2

• Routes without trailing slash cause `307` redirect which breaks reverse proxies via paths

  #327 opened 3 months ago by alyssadai
  2

• Add authentication to `/query` route

  #322 opened 4 months ago by alyssadai
  1

• Split fetching of dataset-level and subject/session-level query results into separate steps

  #265 opened 10 months ago by alyssadai
  1

• Expand error catching for request to graph

  #303 opened 7 months ago by alyssadai
  1

• Pin numpy version to prevent tests from failing

  #320 opened 5 months ago by rmanaem
  1

• Provide way for user to indicate agreement to a data usage agreement

  #268 opened 10 months ago by alyssadai
  3

• our pinned orjson has no python3.12 wheels and needs to be built locally with Rust

  #237 opened 7 months ago by surchs
  2

• Improve inefficient SPARQL query template

  #307 opened 7 months ago by surchs
  2

• Typo in query template

  #306 opened 7 months ago by surchs
  2

• Default httpx timeout too short

  #304 opened 7 months ago by alyssadai
  1

• Remove leftover .template-env file

  #297 opened 7 months ago by alyssadai
  0

• Extend default timeout of `post_query_to_graph()`

  #251 opened 10 months ago by alyssadai
  1

• update query template to work with new session-level phenotypic data model

  #249 opened 10 months ago by alyssadai
  1

• Refactor mock get method for testing to accept return object

  #266 opened 10 months ago by alyssadai
  1

• Bump starlette from 0.27.0 to 0.37.2

  #293 opened 7 months ago by rmanaem
  1

• Bump typing_extensions from 4.4.0 to 4.11.0

  #294 opened 7 months ago by rmanaem
  1

• Bump fastapi from 0.95.2 to 0.110.1

  #292 opened 7 months ago by rmanaem
  1

• Update `num_{imaging,phenotypic}_sessions` to be `num_matching_{imaging,phenotypic}_sessions`

  #271 opened 9 months ago by alyssadai
  1

• Add sample default SPARQL query to repo

  #276 opened 9 months ago by alyssadai
  1

• Warn about quotes interpretation in README instructions for using API docker image directly

  #224 opened 8 months ago by alyssadai
  3

• Implement minimum cell size for matching subjects/dataset

  #267 opened 10 months ago by alyssadai
  1

• Allowing queries for both healthy controls and a specific diagnosis

  #247 opened a year ago by alyssadai
  1

• Add flag for `add_data_to_graph.sh` to write output to a log file

  #250 opened 8 months ago by alyssadai
  2

• Write integration test that confirms the SPARQL query works against a current graph

  #283 opened 9 months ago by surchs
  0

• make subject_data more consistent across aggregated and non-aggregated mode

  #215 opened 10 months ago by surchs
  1

• Decide whether `"session_type"` in API response should be a URI or human-readable

  #262 opened 10 months ago by alyssadai
  1

• Split subject-level data list in API response into imaging and phenotypic session arrays

  #263 opened 10 months ago by alyssadai
  1

• Current pre-commit version no longer works with latest hooks

  #258 opened 10 months ago by alyssadai
  0

• pre-commit CI fails on hooks with 'local' dependencies

  #254 opened 10 months ago by alyssadai
  0

• add_data_to_graph.sh still errors out for older `curl` versions

  #252 opened 10 months ago by alyssadai
  0

• Create workflow for building + pushing `stable` versioned images on release

  #241 opened a year ago by alyssadai
  0

• Rename image tag built by current CD workflow to `nightly`

  #239 opened a year ago by alyssadai
  0

• Rename `ci` workflow to `build_docker`

  #240 opened a year ago by rmanaem
  0

• Remove query tool specific configs from API-graph environment variable table

  #226 opened a year ago by alyssadai
  0

• Refactor request for total number of subjects in matching datasets into separate function

  #234 opened a year ago by alyssadai
  0

• API returns `null` as image modality

  #232 opened a year ago by surchs
  0

• `vocab/` directory not made available to container filesystem

  #230 opened a year ago by alyssadai
  0

• Update vocabulary path to parse and return `nb:Diagnosis` options

  #211 opened a year ago by alyssadai
  2

• Update query template to make session optional

  #225 opened a year ago by alyssadai
  1

• add_data_to_graph.sh errors out for older versions of `curl`

  #213 opened a year ago by alyssadai
  0

• Query response should include total number of subjects in a dataset

  #216 opened a year ago by surchs
  5

• Add neurobagel logo

  #221 opened a year ago by rmanaem
  0

• Update `/attributes/{data_element_URI}` to return both terms AND labels

  #217 opened a year ago by alyssadai
  0