/ndstore

code for storing neurodata images and image annotations

Primary LanguagePythonApache License 2.0Apache-2.0

Scalable database cluster for the spatial analysis and annotation of high-throughput brain imaging data called Neurodata Web Services(formerly called the Open Connectome Project).

Neurodata.io DOI Hex.pm Docs Build Status Service Status

Major directories include:

NOTE: git submodule init and git submodule update for all submodules

Architecture

Installation

  • Use a fresh Ubuntu14.04 instance with sudo access.
wget https://raw.githubusercontent.com/neurodata/ndstore/master/setup/ndstore_install.sh
sudo chmod 7000 ndstore_install.sh
sudo ./ndstore_install.sh

Note: ndstore does not support Docker images because running custom systemd services needs some relaxation of security on the Docker engine leading to issues. We recommend using the install script used above

Benchmarks

The benchmarks were performed on AWS EC2 instance type i2.8xlarge with a MySQL backend.

Read Throughput

Write Throughput