cTiterSub is lacking
trvrb opened this issue · 2 comments
trvrb commented
Currently augur titers sub
outputs a JSON that has entries for avidity
, potency
, substitution
, titers
, but lacks a nodes
entry that could be used to decorate the final tree.json
via augur export
.
This change needs to happen to augur titers sub
and then the seasonal build can be updated.
rneher commented
good point. this raises one other issue. The hope was to have the titer sub
command be independent of a tree. A nodes
field in the json requires a tree. We could either have tree
as an optional argument or have a separate rule that attached a subs
model to a tree.
huddlej commented
I'd vote for an optional tree
argument.