trvrb

Scientist at the Fred Hutch, studying viruses, evolution and immunity. Maintains @blab, @nextstrain and @seattleflu.

Fred Hutchinson Cancer Research CenterSeattle, WA

Pinned Repositories

blotter
bedford lab research
Language:HTML67 28 693
augur
Pipeline components for real-time phylodynamic analysis
Language:Python269 31 710128
auspice
Web app for visualizing pathogen evolution
Language:JavaScript296 28 980163
antigen
Simulating virus evolution and epidemiology
Language:Mathematica20 3 198
coaltrace
Simulating genealogies using charged particles
Language:HTML30 6 36
dynamics-practical
Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
32 9 225
flux
Integrating influenza antigenic dynamics with molecular evolution
Language:TeX12 7 435
PACT
Posterior Analysis of Coalescent Trees
Language:Mathematica14 4 84
phylodynamics-lecture
Lecture on viral phylodynamics
Language:HTML12 4 02
sismid
Pathogen evolution, selection and immunity
Language:Jupyter Notebook46 8 3424

trvrb's Repositories

trvrb/sismid
Pathogen evolution, selection and immunity
Language:Jupyter Notebook46 8 3424
trvrb/coaltrace
Simulating genealogies using charged particles
Language:HTML30 6 36
trvrb/antigen
Simulating virus evolution and epidemiology
Language:Mathematica20 3 198
trvrb/PACT
Posterior Analysis of Coalescent Trees
Language:Mathematica14 4 84
trvrb/flux
Integrating influenza antigenic dynamics with molecular evolution
Language:TeX12 7 435
trvrb/phylodynamics-lecture
Lecture on viral phylodynamics
Language:HTML12 4 02
trvrb/canalization
Manuscript: Canalization of the evolutionary trajectory of the human influenza virus
Language:HTML11 2 31
trvrb/haplotypes
Visualizing evolution as a network of shared mutations
8 2 02
trvrb/gs541-phylodynamics
Lectures and materials for GS541 Introduction to Computational Molecular Biology
Language:HTML7 3 1
trvrb/refdown
Easy referencing for scholarly Markdown
4 4 01
trvrb/setup
Reproducible system setup
Language:Shell4 2 06
trvrb/ancestry
Tracing coalescent histories
Language:JavaScript2 2 01
trvrb/flutrace
Visualizing influenza global circulation patterns
Language:HTML2 3 0
trvrb/ebola-narrative-ms
Language:Jupyter Notebook1 1 0
trvrb/treetime
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
Language:Python1 2 01
trvrb/anonymous-slack
A Heroku service that lets you send anonymous messages to colleagues on Slack.
Language:Go2 0
trvrb/demo-project
Demo for TFCB 2018
Language:Python3 0
trvrb/ebola-nord-kivu
Language:Python1 01
trvrb/gs541-phylogeography
2 0
trvrb/homebrew-science
Scientific formulae for the Homebrew package manager
Language:Ruby2 0
trvrb/lassa
Nextstrain builds for Lassa
Language:Python2 0
trvrb/malaria-sieve
Analysis of sieve effect of RTS,S malaria vaccine
Language:Python4 0
trvrb/medium-data
Talk on data and visualization
Language:JavaScript2 0
trvrb/puppet-r
Install R statistical computing package via Boxen / Puppet
Language:Ruby2 07
trvrb/sctrace
Simulating migration patterns using charged particles
Language:HTML2 1
trvrb/selsim
population genetic simulation
Language:C++2 1
trvrb/stem
Picking influenza stem strains
Language:Ruby3 2
trvrb/wave
Linear strain-space model implemented using tau-leaping ODEs
Language:Java2 2
trvrb/zibraproject.github.io
Zika Sequencing Consortium
Language:JavaScript2 0
trvrb/zika
Data repository of publicly available Zika data
2 01