Pinned Repositories
assembly
Pipelines for assembling NGS data from Seattle flu study.
documentation
Internal platform documentation
genomic-incidence-tracker
husky-musher
A redirecting service for the Husky Coronavirus Testing study
id3c
Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.
id3c-customizations
Extensions of ID3C for the Seattle Flu Study
incidence-mapper
R interface to database, map model training, and model data API Server
lab-result-reports
Tools for generating lab test result reports as PDFs
seattle-geojson
A collection of Seattle maps based on different administrative divisions
switchboard
A REDCap record switchboard for the SFS kit unboxing team.
Seattle Flu Study's Repositories
seattleflu/id3c
Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.
seattleflu/assembly
Pipelines for assembling NGS data from Seattle flu study.
seattleflu/incidence-mapper
R interface to database, map model training, and model data API Server
seattleflu/id3c-customizations
Extensions of ID3C for the Seattle Flu Study
seattleflu/husky-musher
A redirecting service for the Husky Coronavirus Testing study
seattleflu/lab-result-reports
Tools for generating lab test result reports as PDFs
seattleflu/seattle-geojson
A collection of Seattle maps based on different administrative divisions
seattleflu/switchboard
A REDCap record switchboard for the SFS kit unboxing team.
seattleflu/covid19-early-detection
seattleflu/documentation
Internal platform documentation
seattleflu/genomic-incidence-tracker
seattleflu/lisless
A LIS that does less, for the LIS-less.
seattleflu/forecasts-ncov-states
SARS-CoV-2 variant growth rates and frequency forecasts for US states
seattleflu/infra
Work-in-progress Ansible setup for Seattle Flu Study infrastructure.
seattleflu/augur-build
the (in development) augur build for understanding influenza dynamics in Seattle
seattleflu/geocoding
Geocoding addresses into census tracts
seattleflu/hct-autumn-2020
University-wide COVID-19 Testing Program Methods and Autumn 2020 Results
seattleflu/heatmap
Simple heatmap display of sample locations
seattleflu/Lab-Labels
Quickly generate PDFs for printing cryo-safe labels
seattleflu/seattle-flu-js-prototype
This repo contains prototypes and visualization sketches for the Web-based Seattle Flu platform
seattleflu/simulated-data
Simulated Seattle Flu Study data for developing visualization, analysis, and modeling tools.
seattleflu/sqlite-utils
Python CLI utility and library for manipulating SQLite databases
seattleflu/website-y3
A simple, static website for SFS Year 3