Center For Medical Genetics Ghent - Nextflow workflows
Center For Medical Genetics Ghent - Ghent University Hospital - Nextflow workflows
Belgium
Pinned Repositories
configs
Nextflow config files
exomecnv
A nextflow pipeline for calling exome CNVs
germline
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
nextflow-beginner-feb-2024
The repository used at the Beginner Nextflow course in february 2024
preprocessing
Preprocessing workflow for sequencing data at CMGG
qdnaseq
A Nextflow pipeline to create qDNAseq bin annotations
sampletracking
CMGG Sampletracking workflow
structural
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
test-datasets
Test datasets for unit tests with the nf-cmgg pipelines
wisecondorx
A nextflow pipeline for creating references for WisecondorX
Center For Medical Genetics Ghent - Nextflow workflows's Repositories
nf-cmgg/structural
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
nf-cmgg/exomecnv
A nextflow pipeline for calling exome CNVs
nf-cmgg/germline
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
nf-cmgg/nextflow-beginner-feb-2024
The repository used at the Beginner Nextflow course in february 2024
nf-cmgg/preprocessing
Preprocessing workflow for sequencing data at CMGG
nf-cmgg/configs
Nextflow config files
nf-cmgg/qdnaseq
A Nextflow pipeline to create qDNAseq bin annotations
nf-cmgg/sampletracking
CMGG Sampletracking workflow
nf-cmgg/test-datasets
Test datasets for unit tests with the nf-cmgg pipelines
nf-cmgg/wisecondorx
A nextflow pipeline for creating references for WisecondorX