Issues
- 0
New bulk 5'-RACE supported protocol, rescue non-overlaping reads and IgBlast 19 columns format
#342 opened by JustBioinfo - 6
Installation issues - airrflow pipeline
#341 opened by pnatarajan9 - 1
Add TRUST4 to nf-core/airrflow
#312 opened by mapo9 - 2
Automatic clone_threshold is 'NA'. Consider setting --clonal_threshold manually.
#322 opened by petemeng - 0
Incorrect number of sequences
#340 opened by eba28 - 1
Changeo additional output fields
#339 opened by giulioisac - 0
- 1
Error in value[[3L]](cond)
#323 opened by rasmirnov - 1
- 1
Bulk RNAseq pcr_target_locus specification
#311 opened by loipf - 3
AIRRflow error/fails at Dowser step
#309 opened by margaretc-ho - 3
Isotype and c_call columns
#303 opened by eba28 - 2
URGENT: pin nf-validation version
#307 opened by nvnieuwk - 1
Diversity reports
#297 opened by ggabernet - 0
Fetch other databases than IMGT: AIRR reference set
#300 opened by ggabernet - 0
Add regions translations to final repertoire table
#298 opened by ggabernet - 1
- 1
Fastq samplesheet auto single_cell FALSE
#201 opened by ggabernet - 0
Invalid nextflow_schema.json using list type.
#292 opened by adamrtalbot - 2
- 3
Missing output file(s) `*_R1_primers-pass.fastq`
#285 opened by LiuH2020 - 3
test data failing
#275 opened by andreiprodan - 9
- 2
IMGT/GENE-DB downloads failing
#273 opened by mdeboth - 0
- 0
samplesheet check make character
#271 opened by ggabernet - 0
Report findthreshold should report chosen threshold
#272 opened by ggabernet - 0
- 0
Report primers in airrflow report
#193 opened by ggabernet - 1
- 1
- 1
- 1
Define clones with dowser
#251 opened by ggabernet - 3
Recommended parameters for Takara Bio SMARTer Human TCR v2 do not work. --index-file FALSE needs to also be set
#196 opened by jowkar - 0
- 0
Add remaining R scripts to EnchantR
#246 opened by ggabernet - 1
Updating immcantation tool versions
#188 opened by ggabernet - 0
Add info on README.md
#220 opened by ggabernet - 0
Add assembled samplesheet usage docs
#202 opened by ggabernet - 0
- 0
Enchantr report outputs
#203 opened by ggabernet - 0
Output table with all numbers also in `report file size` report, and also add to report
#194 opened by ggabernet - 0
- 0
Clone table to define clones output
#192 opened by ggabernet - 1
Check where `subject_id` is converted to `null`
#204 opened by ggabernet - 1
Process labels and versions
#160 opened by ggabernet - 3
Add no-UMI option
#127 opened by dladd - 3
GUNZIP fails on Google Cloud
#144 opened by swuyts - 2
- 2
Trouble running bcellmagic
#138 opened by aislinnjennings