nf-core/differentialabundance

Failed to publish file => double forward slashes

nick-youngblut opened this issue · 0 comments

Description of the bug

For --outdir I included a trailing forward slash in the gs:// path, which resulted in Failed to publish file: warnings.

It appears that the pipeline is concatenating strings versus using file(params.outdir) / "path/to/output".

Command used and terminal output

`--outdir gs://path/to/output/` instead of `--outdir gs://path/to/output`

Relevant files

No response

System information

  • nextflow 23.10.1
  • GCP
  • Docker
  • pipeline job run from linux VM on GCP Compute Engine