microarray
There are 86 repositories under microarray topic.
mikelove/bioc-refcard
Bioconductor cheat sheet
guma44/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
nf-core/differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
zwdzwd/sesame
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
greenelab/TDM
R package for normalizing RNA-seq data to make them comparable to microarray data.
greenelab/RNAseq_titration_results
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
gustaveroussy/EaCoN
Easy Copy Number !
allielarocco/Microarray-Analysis
Microarray Analysis Pipeline in Python
Bohdan-Khomtchouk/HeatmapGenerator
Cross-platform GUI desktop application for making biological heatmaps
dlaperriere/GEO_microarrays
analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
HenrikBengtsson/aroma.affymetrix
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
tarlaun/BioInf_Project
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
upashu1/Pytorch-UNet-2
UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images
ahmedmoustafa/gene-expression-datasets
Collection of gene expression datasets
DoubleHelixApp/DoubleHelix
Genomic data manipulation tool
viktormiok/PhD-thesis
Latex scripts to compile my PhD thesis
shyammarjit/SAGA
SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data
idssplab/overall_survival_nsclc
bimodal DNN for NSCLC patient overall survival prediction
TCP-Lab/bioTEA
bioTEA - A user friendly tool to perform transcript expression analysis
viktormiok/BioFig
R package for visualization of omics data
viktormiok/tigaR
Temporal Integrative Genomics Analysis in R
XPRESSyourself/XPRESSplot
A toolkit for navigating and analyzing gene expression datasets
alexvpickering/revigoR
scrape REVIGO Gene Ontology web app and plot results
draeger-lab/InCroMAP
Integrated analysis of Cross-platform MicroArray and Pathway data
GrosseLab/BGSC
Bayesian Gene Selection Criterion (BGSC) approach
michaeltneylon/spark_rma
SparkRMA: Robust Multi-array Average (RMA) In Apache Spark
viktormiok/PhD-thesisSM
PhD thesis supplementary materials
viktormiok/tigaRcycle
An R package for utilities to guide in-depth detection of circadian signals from omics time series data
amarinderthind/RankerGUI
R script used for the preparation of the initial input file, i.e. merging of various studies by logFC (LogFC),
anacarolina-estat/Iniciacao-Cientifica-CNPq
Projeto de Iniciação Científica desenvolvido na Unicamp e financiado pelo CNPq com o tema: Métodos de aprendizado de máquina supervisionado para classificação aplicados a dados de microarranjo de DNA.
gh-osh/pd.mirna.4.1
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
kalyaniuniversity/mgx-datasets
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
RGLab/HIPCMatrix
Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace
SamThilmany/microarray-analysis_treatment-kinetics
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
SaradhaVenkatachalapathy/Cell_Shape_TNF_alpha_PNAS_2017
Analysis in the paper Mitra et.al. PNAS 2017.
tiagochavo87/LCSH_analysis
Analysis of long continuous stretches of homozygosity of the human genome.