Cite this repository:
Ayan Kumar Saha, & Debabrata Acharya. (2020, July 28). kalyaniuniversity/mgx-datasets: Publicly available Microarray Gene Expression Datasets (Version 0.3). Zenodo. http://doi.org/10.5281/zenodo.3964223
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
Please note that even though this repository is free to use and modify under MIT License, but the individual datasets referenced here may be conducted under their own licencing terms.
If we are keeping a copy of the dataset with this repository, it shall be available in the datasets folder of each named dataset. Please check the reference table below to find whether we keep a copy of the dataset uder the Dataset tab.
If we have written a toolset for a certain dataset, it shall be available under the toolkit folder of each named dataset. Please check the reference table below to find whether a certain dataset has any associated toolset under the Tools tab. Note that some of the preprocessing has also been done using our own preprocessing library pytoolkit available at (kalyaniuniversity/pytoolkit)[https://github.com/kalyaniuniversity/mgx-datasets].
| Microarray Gene Expression Dataset Reference Table | |||||
|---|---|---|---|---|---|
| Sl. No. | Name | Reference | Dataset | Tools | Notes |
| 1 | DLBCL | Biolab | DLBCL/FL | DLBCL Toolkit | - |
| 2 | GSE412 | Biolab | GSE412 (ChildALL) | GSE412 Toolkit | - |
| 3 | leukemia | Biolab | leukemia | leukemia Toolkit | - |
| 4 | MLL | Biolab | MLL | MLL Toolkit | - |