geneexpression
There are 28 repositories under geneexpression topic.
benfulcher/mouseGradients
Code to reproduce analyses of mouse cortical gradients
cparsania/FungiExpresZ
An R-shiny package to analyse and visualise fungal gene expression data
benfulcher/AllenSDK
Workflow for retrieving spatial gene-expression data from the Allen Institute's Mouse Brain Atlas
havelhakimi/gene-expression
Agglomerative based clustering on gene expression dataset
romunov/peep
Fit your oversized data.frame to your console width.
nikitasigal/biclustlib
A biclustering library with datasets, evaluation measures and a benchmarking framework
NKI-GCF/gensum
RNA-seq reads to gene counts
rahul-root07/Cancer-classification-TCGA
The Cancer Genome Atlas datbase | Cancer Classification | Deep Learning | CNN
LoaloaF/DPre
DPre is a bioinformatic tool that enables the user to explore cell type conversion/ differentiation experiments. DPre may take the expression or the differentially regulated genes of the samples to rate transcriptional similarity with a reference dataset, the targets.
mitumh3/GEO-dataprocess-streamlit
An interactive Streamlit app for processing and visualizing GEO data from NCBI's Gene Expression Omnibus.
atsumiando/RNAseq_figure_plotter_python
Require one command line! Generate nine common RNAseq figures from RNAseq result table by python.
DanishAslam7/GenExp
This is the R code to extract Gene Expression Profiles of particular genes from GEO (Gene Expression Omnibus) datasets.
kalyaniuniversity/mgx-datasets
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
krause-lab/predictsamplesize
Predict the samplesizes for certain errorrates for statistical classifiers
AGarciaMora/CocoTF
CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.
atsumiando/RNAseq_figure_plotter
Require just one command line! Generate nine common plots from RNAseq result table by R.
dBenedek/MetabolicExpressR
Metabolic subtyping of tumors from gene expression data
Hazperera/Gene_Expression_Analysis
Differential expression analysis using R :dna:
igarcia17/zebraFishTranscriptome
Shiny app that recopilates all gene expression of zebra fish and informs about the tissue and developmental stage in which the gene is expressed.
MeghanaDutta/Smokers_Gene_Expression_Analysis_Workflow
A workflow to understand the changes in expression levels of epithelial cells in smokers.
thisisyichenzhang/COMET
Implementation code for evaluating COMET approach on various simulation datasets
ashleyzhou972/MRF
migrated from Gitlab
Fattigman/SRIQ
Implementation of SRIQ clustering
Hazperera/haz-Msc-IMIDIA_GE
PCA: Exploring transcriptome-wide changes using python (pandas/scikit-learn/matplotlib) :dna: :computer: :woman_scientist: :desktop_computer:
Qaswara98/Thesis_PCA_vs_AE
This project is a comparative study of Autoencoder (AE) and Principal Component Analysis (PCA) for dimensionality reduction in gene expression data. It aims to understand the unique capabilities and applications of both methods in handling high-dimensional biological data.
silviozambonunitn/OneGenE_FANTOM
Repository of my internship in the RDDS lab of the University of Trento