ncbi-database
There are 31 repositories under ncbi-database topic.
FOI-Bioinformatics/flextaxd
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
tlatkowski/deep-learning-gene-expression
Deep learning methods for feature selection in gene expression autism data.
Joseph7e/Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
allielarocco/Microarray-Analysis
Microarray Analysis Pipeline in Python
guyleonard/taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
banhbio/Taxonomy.jl
Julia package to handle the NCBI Taxonomy database.
MountainMan12/SARS-Cov2-phylo
Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree
CNuge/go-fasta
A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format
jranaraki/NCBIdataPrep
An R code to convert NCBI data files into CSV
Hasibwajid/Intro-To-BioInformatics-with-python
Explore bioinformatics tasks with Python! This collection offers scripts using Biopython for NCBI database access, sequence parsing, DNA transcription, translation, GC content calculation, and sequence analysis. Perfect for beginners learning bioinformatics in Python.
PoorRican/ncbi-rs
Find and retrieve biological data and its metadata from NCBI
profetia/VirFormer
Identifying viruses as an anomaly
Sarah-Hesham-2022/BioPython-Getopt-Biological-Command-Line-Interpreter
Bio Python Project using getopt library in python and engaging with the command line prompt.
Androidbeingx/OMIC_RESEARCH
Python class project in collab with @heloint and @anivalle. Using Entrez, Seq.io, regex, pandas
faryal92/datasets
NCBI Datasets is an experimental resource for finding and building datasets
kalyaniuniversity/mgx-datasets
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
shriharipathak/ncbi
Crawling NCBI Pubmed Data using HTML and jQuery
symgenoevolab/genome_metadata
Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
tracywong117/NCBI-get-all-children-organism-under-ancestor
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
AjayD17/NCBI-Website
I developed the "National Centre for Biotechnology Information" project to create a comprehensive and user-friendly platform for accessing and exploring a wealth of biotechnological information. Utilizing HTML, CSS, and Bootstrap, I designed a responsive web application that ensures seamless accessibility across various devices and screen sizes.
b4zinga/fluPlatform
Reconfigurable Platform of Spreading Process of Global Influenza.
dembanakh/GenePortraits
Django app for generating frequency portraits of gene sequences
eric9n/ncbi_dl
A command-line tool for downloading and managing NCBI genome data
IlyinVyacheslav/BioInformatics
Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course
NataliaKudr/IGV
Python and R Scripts for Statistical analysis of available immunogobulin variable genes
RamDvlp/Abstract-Generator
LLM model which summarizes academic article into an abstract paragraph
vishnunv0911/PrDb
A tool to fetch Protein sequences of different subtypes of Influenza A virus from the NCBI database and create a local database to store the sequences for further library preparation used for Phage-Immunoprecipitation Sequencing.
asadprodhan/How-to-download-genomes-using-the-accession-number
How to download genomes using the accession number
codecreatede/sra-explorer
explore sra databases and sequence retrieval
codecreatede/tair-pubmed-connect
tair id to pubmed links for articls, genes, annotations, locus tag
fhdsl/AnVIL_SRA_Data
Pull Sequence Read Archive (SRA) data into AnVIL