ncbi-database
There are 27 repositories under ncbi-database topic.
FOI-Bioinformatics/flextaxd
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
tlatkowski/deep-learning-gene-expression
Deep learning methods for feature selection in gene expression autism data.
Joseph7e/Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
allielarocco/Microarray-Analysis
Microarray Analysis Pipeline in Python
guyleonard/taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
banhbio/Taxonomy.jl
Julia package to handle the NCBI Taxonomy database.
MountainMan12/SARS-Cov2-phylo
Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree
jranaraki/NCBIdataPrep
An R code to convert NCBI data files into CSV
CNuge/go-fasta
A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format
PoorRican/ncbi-rs
Find and retrieve biological data and its metadata from NCBI
profetia/VirFormer
Identifying viruses as an anomaly
Sarah-Hesham-2022/BioPython-Getopt-Biological-Command-Line-Interpreter
Bio Python Project using getopt library in python and engaging with the command line prompt.
Androidbeingx/OMIC_RESEARCH
Python class project in collab with @heloint and @anivalle. Using Entrez, Seq.io, regex, pandas
faryal92/datasets
NCBI Datasets is an experimental resource for finding and building datasets
kalyaniuniversity/mgx-datasets
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
shriharipathak/ncbi
Crawling NCBI Pubmed Data using HTML and jQuery
symgenoevolab/genome_metadata
Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
tracywong117/NCBI-get-all-children-organism-under-ancestor
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
AjayD17/NCBI-Website
I developed the "National Centre for Biotechnology Information" project to create a comprehensive and user-friendly platform for accessing and exploring a wealth of biotechnological information. Utilizing HTML, CSS, and Bootstrap, I designed a responsive web application that ensures seamless accessibility across various devices and screen sizes.
b4zinga/fluPlatform
Reconfigurable Platform of Spreading Process of Global Influenza.
dembanakh/GenePortraits
Django app for generating frequency portraits of gene sequences
IlyinVyacheslav/BioInformatics
Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course
NataliaKudr/IGV
Python and R Scripts for Statistical analysis of available immunogobulin variable genes
vishnunv0911/PrDb
A tool to fetch Protein sequences of different subtypes of Influenza A virus from the NCBI database and create a local database to store the sequences for further library preparation used for Phage-Immunoprecipitation Sequencing.
asadprodhan/How-to-download-genomes-using-the-accession-number
How to download genomes using the accession number
fhdsl/AnVIL_SRA_Data
Pull Sequence Read Archive (SRA) data into AnVIL
RamDvlp/Abstract-Generator
LLM model which summarizes academic article into an abstract paragraph