DSL2: Print Nuclear Contamination JSON `N/A` value

Question

DSL2: Print Nuclear Contamination JSON `N/A` value

TCLamnidis opened this issue a year ago · 2 comments

The print nuclear contaminatino script produces a JSON with the results, in which the na value is set to "N/A". This should be replaced with a valid JSON missing value (null?) so that loading of the JSON for downstream processing does not raise errors (strings vs floats).

Answer 1 · 2023-06-07T13:34:41.000Z

See multimeric/TidyMultiqc#9 for a similar issue with NaNs

Answer 2 · 2023-06-23T14:05:13.000Z

As of #1004, we now print "none" in the nuclear_contamination.txt and "null" in the nuclear_contamination.json. Will need to observe how MultiQC behaves