adna
There are 28 repositories under adna topic.
nf-core/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
sneuensc/mapache
mapping pipeline for ancient DNA
Integrative-Transcriptomics/DamageProfiler
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
nf-core/coproid
Coprolite host Identification pipeline
hringbauer/ancIBD
Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.
mitobench/mitoBench
The mitochondrial workbench
maxibor/adrsm
Ancient DNA Read Simulator for Metagenomic
nevrome/mobest
R Package - Spatiotemporal Ancestry Interpolation and Search
CamilaDuitama/aKmerBroom
🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
nevrome/mobest.analysis.2022
Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest
paleobiotechnology/EMN001_Paleofuran
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
sidora-tools/sidora.core
Backend for all sidora applications
zhangyi-he/WFM-1L-DiffusApprox-MLE
Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach
poseidon-framework/janno
R Package - Handling .janno files in R
apeltzer/ClipAndMerge
The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.
longg2/LongBioinformatics
Scripts used by George S. Long
zhangyi-he/WFM-1L-DiffusApprox-PMMH
Estimating temporally variable selection intensity from ancient DNA data
zhangyi-he/WFM-1L-DiffusApprox-PMMHwGibbs
Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations
DanielRCA/MTDNA-CR
Raw code to get polymorphisms from samples analysed by using the PowerSeq® CRM Nested System kit (Promega Corporation)
DanielRCA/NCR-mtDNA_ampliconbasedngs
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
poseidon-framework/poseidon-schema
An archaeogenetic genotype data organisation file format
zhangyi-he/WFM-1L-DiffusApprox-BlockPMMH-Gallus
Inferring the timing and strength of natural selection and gene migration in the evolution of chickens from ancient DNA data
zhangyi-he/WFM-2L-DiffusApprox-AdaptPMMH
Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis
zhangyi-he/WFM-2L-DiffusApprox-PMMH
Detecting and quantifying natural selection at two linked loci from time series data of allele frequencies with forward-in-time simulations
ilight1542/probegen
Pipeline for generation of fasta unique capture-probes from a set of genomes
nevrome/aadr2doi
CLI tool to resolve AADR publication keys
nevrome/kintreex
Early prototype of a pedigree exploration expert system
nevrome/uni.tuebingen.poseidon.intro.2h.2024
Website for a ~2h demonstration of Poseidon and some of its tools, features and components