Integrative-Transcriptomics/DamageProfiler

Issues

• How to create a valid bam file

  #56 opened 3 months ago by Thomieh73
  2

• How to run in Computing Cluster?

  #60 opened 3 months ago by sultandromeda
  2

• Read processing gets cripplingly slow over time

  #59 opened a year ago by TCLamnidis
  0

• Add an option to subsample the input

  #58 opened a year ago by TCLamnidis
  1

• java.lang.OutOfMemoryError: Requested array size exceeds VM limit

  #57 opened 2 years ago by ChristopherBarrington
  4

• Unsupported Java Class Version

  #55 opened 2 years ago by geneanalyst
  1

• rescale

  #54 opened 3 years ago by atongsa
  1

• OutOfMemoryError: Java heap space

  #50 opened 4 years ago by lczech
  6

• Output folder wrong

  #45 opened 4 years ago by lczech
  11

• Output format not recognized by MultiQC

  #46 opened 4 years ago by lczech
  7

• -version does not work.

  #48 opened 4 years ago by jfy133
  2

• Offer build with older version of Java?

  #43 opened 4 years ago by jfy133
  10

• Read CRAM input

  #26 opened 4 years ago by apeltzer
  3

• Performance improvements required

  #10 opened 7 years ago by apeltzer
  1

• Documentation

  #5 opened 4 years ago by apeltzer
  0

• Relax reference name validation with ValidationStringency

  #39 opened 4 years ago by maxibor
  6

• GUI Doesn't load

  #38 opened 4 years ago by jfy133
  3

• DamageProfiler fails when having ambiguous bases in MD tag

  #31 opened 4 years ago by alexhbnr
  4

• Single Stranded Protocol support

  #9 opened 4 years ago by apeltzer
  1

• Rescaling feature for ss/ds DNA

  #11 opened 4 years ago by apeltzer
  1

• Add `--version` flag

  #32 opened 5 years ago by jfy133
  11

• Investigate UDG option

  #13 opened 5 years ago by apeltzer
  2

• Identity histogram plot:

  #27 opened 5 years ago by EisenRa
  2

• Improved species filter

  #15 opened 5 years ago by JudithNeukamm
  1

• No output when choosing the option '--all_mapped_reads'

  #24 opened 5 years ago by alexhbnr
  4

• Add Tests for publication

  #7 opened 7 years ago by apeltzer
  0

• Transfer repository to integrative-transcriptomics once public

  #8 opened 7 years ago by apeltzer
  0

• DOI / ZENODO Integration

  #6 opened 7 years ago by apeltzer
  0

• Created plot needs to be switched

  #3 opened 7 years ago by apeltzer
  0

• Improved Y - Axis Height

  #1 opened 7 years ago by apeltzer
  3