Add Manta support for structural variant prediction
jonasscheid opened this issue · 2 comments
jonasscheid commented
Description of feature
The pipeline should also be able to predict putative Neo-epitopes based on structural variants (SV). Currently we only support SNVs and small indels. Predicting Neo-epitopes based on SV could reveal further therapy targets, e.g. deriving from gene-fusions. A common SV annotation tool is Manta