Can you keep maintaining it?
Chao-Guo-hub opened this issue · 1 comments
Chao-Guo-hub commented
I encountered the same problem as TrimGalore in Sarek, that is, the python version is not compatible.
Thank you!
>>> Now performing quality (cutoff '-q 20') and adapter trimming in a single pass for the adapter sequence: 'AGATCGGAAGAGC' from file Heart_R1_T1_1.fastq.gz <<<
ERROR: Running in parallel is not supported on Python 2
ShannonTown commented
I ran into the same problem, and fixed the issue temporarily with this:
nf-core/sarek#215 (comment)
This only bypassed the problem by avoiding using multicore of cpu, running much more slowly. It seems to be the same issue as in Sarek where Cutadapt does not use python3 that's actually installed in the system.