GATK4_GERMLINECNVCALLER modules don't emit .calls. Should be .cohortcalls or .casecalls?
bnjvrjnke opened this issue · 2 comments
bnjvrjnke commented
call_sv_germlinecnvcaller.nf use GATK4_GERMLINECNVCALLER.out.calls
GATK4_GERMLINECNVCALLER module only emit cohortcalls and casecalls
jemten commented
Thanks for reporting @bnjvrjnke. We'll make a patch for this
ramprasadn commented
This is now fixed in the latest release @bnjvrjnke.