nf-core/scdownstream

additional output for cellbender

fbnrst opened this issue · 1 comments

Description of feature

cellbender produces some outputs which are neccesary for QC (https://cellbender.readthedocs.io/en/latest/usage/index.html#quality-control-checks), e.g. output_report.html, output.log and output.pdf. It would be great to add them to the output, would you agree? I just looked at some of them in an analysis of mine and realised cellbender did not converge for some samples.

Yes, can easily to that after this PR has been merged.