nf-core/viralintegration

v1.0.0 Release Criteria

edmundmiller opened this issue · 0 comments

edmundmiller commented

Description of feature

  • Clean up published directories
  • Remove publishing of intermediate results (I don't think they'll be of use to people, probably just going to take up space)
  • Bring virus report and summary into MultiQC (if that's even possible)
  • Split into subworkflows to make naming easier(e.g., instead of STAR_GENOMEGENERATE_HOST it could be HOST:STAR_GENOMEGENERATE)
  • Determine what modules could be "nf-core-ized" and made more maintainable.
  • Add support for single end reads #64