nf-core/viralintegration

STAR Failure - roll back version

alyssa-ab opened this issue · 1 comments

alyssa-ab commented

Description of the bug

STAR_GENOME_GENERATE_HOST and STAR_ALIGN_PLUS failing on full size HPC runs
Rolled back to STAR 2.7.9a - runs through STAR_ALIGN_PLUS then terminates

Look into all STAR versions and containers matching
STAR update commit: 41e30ab

Command used and terminal output

STAR_GENOME_GENERATE_HOST Command Error:
Genome_genomeGenerate.cpp:286:genomeGenerateL exiting because of *OUTPUT FILE* error: could not write the output file star//SA_7
fail()=1 ; bad()=1
Error while trying to write chunk # 0; 0 bytes
File size full = 7233921128 bytes
File size on disk = 173015040 bytes
Solution: check that you have enough space on the disk
Empty space on the disk = 234018081603584 bytes

STAR_ALIGN_PLUS Command Error (after rollback to STAR 2.7.9a):
EXITING because of FATAL ERROR: number of bytes expected from the BAM bin does not agree with the actual size on disk: Expected bin size=3772293264 ; size on disk=1684748073 ; bin number=45

Relevant files

No response

System information

Failing version of STAR 2.7.10a
Rollback to STAR 2.7.9a

edmundmiller commented

Might be caused by alexdobin/STAR#1763