nfdi4plants/ARCTokenization

Issues

• Use OBO.NET.CodeGeneration for structural ontology generation

  #59 opened 3 months ago by kMutagene
  0

• Add integration tests for parsing ISA files from tokens

  #54 opened 6 months ago by kMutagene
  0

• [BUG] When parsing User Comments, the name of the comment (not the value!) gets lost

  #44 opened 9 months ago by omaus
  0

• Transfer ArcGraph into ARCTokenization

  #34 opened a year ago by omaus
  0

• ProcessGraph parsing function (Study & Assay) only works with full paths but a function for tokens (like those for metadata sheets) would be nice

  #51 opened 7 months ago by omaus
  0

• Move ControlledVocabulary to own repo

  #58 opened 3 months ago by omaus
  1

• Add CodeGenerator for structural ontologies

  #55 opened 3 months ago by omaus
  1

• Feature Request - Enhanced Tokenization for Specific Folders and Files

  #52 opened 6 months ago by LibraChris
  0

• [BUG] Annotation table parsing can result in CvParam lists of incorrect length when parsing incorrect building blocks

  #38 opened 7 months ago by kMutagene
  1

• Adapt IO column parsing logic to new `Input[X] / Output[Y]` headers

  #25 opened 7 months ago by kMutagene
  2

• Match column headers via arctrl regex instead of exact string matching

  #26 opened 7 months ago by kMutagene
  1

• [Discussion] AnnotationTable.TokenizedAnnotationTable

  #39 opened 7 months ago by HLWeil
  4

• `ARCMock` does not allow adding of User Comments

  #50 opened 8 months ago by omaus
  1

• `Assay.parseMetadataSheetfromFile` does not parse metadata sheet: says worksheet is not present

  #36 opened 8 months ago by omaus
  0

• `Study.parseMetadataSheetfromFile` does not parse metadata sheet: says worksheet is not present

  #35 opened 8 months ago by omaus
  4

• [BUG] `ARCMock.AssayMetadataTokens` misses Assay Technology Type TAN

  #47 opened 8 months ago by omaus
  1

• [BUG] Study structural ontology has incorrect ID links in some cases

  #42 opened 8 months ago by omaus
  2

• Make ARCMock accessible for consumption in other libraries

  #45 opened 8 months ago by kMutagene
  1

• Refactor FileSystem token-based metadata parsing from ValidationPackage POC into ARCTokenization

  #46 opened 8 months ago by kMutagene
  0

• [Discussion] is it really necessary to nest static ontology terms

  #41 opened 10 months ago by kMutagene
  2

• [Feature Request] Annotation Table Graph

  #40 opened 10 months ago by HLWeil
  0

• Implement equality for CvParam to compare with another CvParam (StructuralEquality)

  #19 opened a year ago by omaus
  0

• Use new equals overrides for testing CvParam equality in ARCTokenizarion tests

  #33 opened a year ago by kMutagene
  0

• Investigation Ontology: Investigation Person ORCID misses `follows` relationship

  #30 opened a year ago by omaus
  10

• Investigation Ontology: STUDY misses some `follows` relationships

  #31 opened a year ago by omaus
  1

• [BUG] Comment <Investigation Person ORCID> is parsed as UserParam and has no CvTerm

  #29 opened a year ago by omaus
  2

• Improve parsers to cover more CvTerms

  #18 opened a year ago by omaus
  2

• [BUG] Fix wrong display when `printfn`ing

  #22 opened a year ago by omaus
  2

• Add integration tests

  #21 opened a year ago by omaus
  0

• Unravel tokenization

  #20 opened a year ago by omaus
  0

• Check how missing values are handled

  #23 opened a year ago by kMutagene
  1

• [Feature] New parser for ArcGraphModel.IO

  #16 opened a year ago by omaus
  0

• [BUG] `parseTableColumn` and `parseColumn` naming is interchanged

  #14 opened a year ago by omaus
  0

• [Fable] support warning

  #7 opened a year ago by Freymaurer
  2

• Unify isa column names as type in ArcGraphModel

  #1 opened a year ago by Freymaurer
  2